Daniel Blankenberg 61ca17eade Add a change_format tag to output datasets in tools. This allows for dynamic switching of output datatype based upon input values. ...

Several tools have been updated to take advantage of this, eliminating their need for code_files.

2008-09-30 16:17:12 -04:00

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phastOdds

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

extract_genomic_dna.py

Reverting extract_genomic_dna and blat_wrapper tools to rev 1472.

2008-08-21 08:54:51 -04:00

extract_genomic_dna.xml

Add a change_format tag to output datasets in tools. This allows for dynamic switching of output datatype based upon input values.

2008-09-30 16:17:12 -04:00

extract_GFF_Features.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

extract_GFF_Features.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

liftOver_wrapper_code.py

Changes to liftOver tool: Modified the liftOver.loc file and changed the script files as required.

2008-03-21 15:51:40 +00:00

liftOver_wrapper.py

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

liftOver_wrapper.xml

Changing liftOver input from BED to Interval in order to preserve the contents of columns other than the chromosome, start and end columns. This information was previously being lost during Interval to BED conversion.

2008-06-08 19:28:45 +00:00