Nicola Soranzo b4c1119f00 Code cleanups from pyupgrade ...

Found by running:

```
ack --type=python -f | grep -v '^lib/galaxy/schema/bco/\|^lib/galaxy/schema/drs/\|^tools/' | xargs pyupgrade --py37-plus
```

2023-01-16 14:34:55 +00:00

..

biotools

Move things around

2022-11-16 17:01:28 +01:00

data

Code cleanups from pyupgrade

2023-01-16 14:34:55 +00:00

mulled

Check GitHub API rate limit in `get_alternative_versions`, skip test if hit

2023-01-04 10:48:34 +00:00

tool_directories/r-tool-dir

Systematic handling of remotely required tool files.

2021-08-10 14:04:32 -04:00

toolbox

Apply black formatting.

2022-02-03 07:42:20 -05:00

verify

Apply black formatting.

2022-02-03 07:42:20 -05:00

__init__.py

…

test_conda_resolution.py

Fix conda-build version not compatible

2022-11-04 00:38:23 +00:00

test_container_description.py

Fix cache image singularity resolver if path contains uppercase chars

2022-08-11 13:32:21 +02:00

test_container_resolution.py

Merge branch 'release_22.01' into release_22.05

2022-08-30 20:32:39 +02:00

test_cwl_util.py

Move unit tests to more appropriate packages.

2020-07-14 09:24:42 -04:00

test_cwl.py

Fix `parse_requirements_and_containers()` for CWL and YAML tools

2022-06-22 03:25:56 +01:00

test_docker_volumes.py

Drop containers package, move to tool_util

2022-03-24 19:51:59 +01:00

test_edam_util.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_ontologies.py

Allow legacy EDAM mappings.

2022-03-07 16:54:54 -05:00

test_output_checker.py

Replace `unittest.TestCase` with pytest-based partial re-implementation

2022-09-27 03:34:58 +01:00

test_parsing.py

Linting fixes

2022-12-14 11:03:34 +01:00

test_required_files.py

Replace `unittest.TestCase` with pytest-based partial re-implementation

2022-09-27 03:34:58 +01:00

test_resolution_cache.py

Merge branch 'release_22.01' into release_22.05

2022-08-30 20:32:39 +02:00

test_singularity_util.py

Fix position of cleanenv flag in singularity command

2022-08-17 09:53:08 +02:00

test_tool_deps.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_tool_linters.py

Bump format="input" to linting error

2023-01-13 10:58:57 +01:00

test_tool_loader.py

Merge branch 'release_22.01' into dev

2022-02-21 17:00:55 +00:00

test_toolbox_view_parsing.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_toolbox_view_sources.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_util.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_verify_function.py

Initial unit test for copying test data.

2022-09-23 09:11:40 -04:00

test_verify_hid.py

Initial unit test for copying test data.

2022-09-23 09:11:40 -04:00

test_verify_script.py

mypy 0.991 + bonus extra typing

2022-11-28 04:50:00 +00:00

test_verify.py

Fix pytest warning

2022-11-08 20:23:57 +00:00

test_wait.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

util.py

Replace `GALAXY_TEST_INCLUDE_SLOW env variable with external_dependency_management` pytest marker

2022-11-03 21:43:37 +00:00