galaxy

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T

Daniel Blankenberg df82f3e163 Add the ability for metadata to be set in an external process, this requires set_metadata_externally = True in universe_wsgi.ini.

Currently this is supported in the local runner (long running set_meta() can now be canceled the same as with jobs) and in the non-staging PBS runner.

There is a slight change to how new Metadata FileParameters are to be created in datatype.set_meta(), see the MAF datatype.

TODO:
Prevent editing of metadata on a running job when metadata is to be set externally.
Have datasets which were copied before job completion use the metadata from the original output dataset; currently .set_meta() is called locally on these.

2009-03-03 12:54:06 -05:00

cleanup_datasets

Normalize the model supporting the new library features. This rev assumes all current Library tables will be dropped so they are re-created at server start-up ( all library data will be lost ). Normalized objects are as follows:

2009-01-28 16:29:30 -05:00

metagenomics

add scripts for preparing nt and wgs databases.

2008-03-27 17:41:40 +00:00

microbes

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

others

Script to enumerate GOPS JOIN jobs that could have returned an incorrect result before the issue with minimum overlap was fixed last week.