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galaxy/test/functional/tools/markdown_report_from_script.xml
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2025-05-02 11:25:21 -04:00

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<tool id="markdown_report_from_script" name="markdown_report_from_script" version="1.0">
<command><![CDATA[
echo "Some contents for standard output";
echo "Hello World" > '$output_text';
cp '$__tool_directory__/data/1.bed' '$output_table';
cp '$__tool_directory__/data/rgWebLogo3_test.jpg' '$output_image';
python '$__tool_directory__/markdown_report_simple_script.py'
]]></command>
<inputs>
<param name="title" type="text" label="Title"/>
</inputs>
<outputs>
<data name="output_text" format="txt"/>
<data name="output_image" format="jpg"/>
<data name="output_table" format="tsv"/>
<data name="output_report" format="tool_markdown" from_work_dir="output_report.md" />
</outputs>
<tests>
<test>
<param name="title" value="foobar" />
<output name="output_report" ftype="tool_markdown">
<assert_contents>
<has_line line="# Dynamically Generated Report" />
</assert_contents>
</output>
</test>
</tests>
<help>
</help>
</tool>