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54 lines
1.6 KiB
XML
54 lines
1.6 KiB
XML
<tool id="markdown_report_extra_files" name="markdown_report_extra_files" version="1.0">
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<command><![CDATA[
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mkdir '$output_report.extra_files_path';
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cp '$__tool_directory__/data/1.bed' '$output_report.extra_files_path/test.bed';
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cp '$__tool_directory__/data/rgWebLogo3_test.jpg' '$output_report.extra_files_path/rgWebLogo3_test.jpg';
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echo "I am writing this to standard output!";
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cp '${tool_markdown}' '${output_report}';
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]]></command>
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<configfiles>
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<configfile name="tool_markdown"><![CDATA[
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# ${title}
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Here is an image we just stuck in an extra files path
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```galaxy
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history_dataset_as_image(output=output_report, path="rgWebLogo3_test.jpg")
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```
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This is a fancy table using fancy table features for an extra files.
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```galaxy
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history_dataset_as_table(output=output_report, path="test.bed", title="A Fancy Title!", footer="Here is a small legend.")
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```
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The standard out for this tool execution is:
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```galaxy
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tool_stdout()
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```
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This is my document and I have populated the title from a parameter.
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]]></configfile>
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</configfiles>
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<inputs>
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<param name="title" type="text" label="Title"/>
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</inputs>
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<outputs>
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<!-- <data name="output_directory" format="html"/> -->
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<data name="output_report" format="tool_markdown"/>
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</outputs>
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<tests>
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<test>
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<param name="title" value="foobar" />
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<output name="output_report" ftype="tool_markdown">
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<assert_contents>
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<has_line line="# foobar" />
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</assert_contents>
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</output>
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</test>
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</tests>
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<help>
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</help>
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</tool>
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