Files
galaxy/scripts/copy_sample_files.sh
T

40 lines
1.2 KiB
Bash
Executable File

#!/bin/bash
SAMPLES="
tool_shed_wsgi.ini.sample
datatypes_conf.xml.sample
external_service_types_conf.xml.sample
migrated_tools_conf.xml.sample
reports_wsgi.ini.sample
shed_tool_conf.xml.sample
tool_conf.xml.sample
shed_tool_data_table_conf.xml.sample
tool_data_table_conf.xml.sample
tool_sheds_conf.xml.sample
data_manager_conf.xml.sample
shed_data_manager_conf.xml.sample
openid_conf.xml.sample
job_metrics_conf.xml.sample
universe_wsgi.ini.sample
lib/tool_shed/scripts/bootstrap_tool_shed/user_info.xml.sample
tool-data/shared/ncbi/builds.txt.sample
tool-data/shared/ensembl/builds.txt.sample
tool-data/shared/ucsc/builds.txt.sample
tool-data/shared/ucsc/publicbuilds.txt.sample
tool-data/shared/ucsc/ucsc_build_sites.txt.sample
tool-data/shared/igv/igv_build_sites.txt.sample
tool-data/shared/rviewer/rviewer_build_sites.txt.sample
tool-data/*.sample
static/welcome.html.sample
"
# Create any missing config/location files
for sample in $SAMPLES; do
file=${sample%.sample}
if [ ! -f "$file" -a -f "$sample" ]; then
echo "Initializing $file from `basename $sample`"
cp $sample $file
fi
done