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69 lines
3.0 KiB
Plaintext
69 lines
3.0 KiB
Plaintext
<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
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<tables>
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<!-- Locations of all fasta files under genome directory -->
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<table name="all_fasta" comment_char="#">
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<columns>value, dbkey, name, path</columns>
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<file path="tool-data/all_fasta.loc" />
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</table>
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<!-- Locations of indexes in the BFAST mapper format -->
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<table name="bfast_indexes" comment_char="#">
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<columns>value, dbkey, formats, name, path</columns>
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<file path="tool-data/bfast_indexes.loc" />
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</table>
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<!-- Locations of protein (mega)blast databases -->
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<table name="blastdb_p" comment_char="#">
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<columns>value, name, path</columns>
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<file path="tool-data/blastdb_p.loc" />
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</table>
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<!-- Locations of indexes in the BWA mapper format -->
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<table name="bwa_indexes" comment_char="#">
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<columns>value, dbkey, name, path</columns>
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<file path="tool-data/bwa_index.loc" />
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</table>
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<!-- Locations of indexes in the BWA color-space mapper format -->
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<table name="bwa_indexes_color" comment_char="#">
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<columns>value, dbkey, name, path</columns>
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<file path="tool-data/bwa_index_color.loc" />
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</table>
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<!-- Locations of MAF files that have been indexed with bx-python -->
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<table name="indexed_maf_files">
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<columns>name, value, dbkey, species</columns>
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<file path="tool-data/maf_index.loc" />
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</table>
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<!-- Locations of fasta files appropriate for NGS simulation -->
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<table name="ngs_sim_fasta" comment_char="#">
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<columns>value, dbkey, name, path</columns>
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<file path="tool-data/ngs_sim_fasta.loc" />
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</table>
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<!-- Locations of PerM base index files -->
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<table name="perm_base_indexes" comment_char="#">
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<columns>value, name, path</columns>
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<file path="tool-data/perm_base_index.loc" />
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</table>
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<!-- Locations of PerM color-space index files -->
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<table name="perm_color_indexes" comment_char="#">
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<columns>value, name, path</columns>
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<file path="tool-data/perm_color_index.loc" />
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</table>
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<!-- Location of Picard dict file and other files -->
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<table name="picard_indexes" comment_char="#">
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<columns>value, dbkey, name, path</columns>
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<file path="tool-data/picard_index.loc" />
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</table>
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<!-- Location of SRMA dict file and other files -->
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<table name="srma_indexes" comment_char="#">
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<columns>value, dbkey, name, path</columns>
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<file path="tool-data/picard_index.loc" />
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</table>
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<!-- Location of Mosaik files -->
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<table name="mosaik_indexes" comment_char="#">
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<columns>value, dbkey, name, path</columns>
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<file path="tool-data/mosaik_index.loc" />
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</table>
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<!-- Locations of indexes in the 2bit format -->
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<table name="twobit" comment_char="#">
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<columns>value, path</columns>
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<file path="tool-data/twobit.loc" />
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</table>
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</tables>
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