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46 lines
1.2 KiB
Python
46 lines
1.2 KiB
Python
import json
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import os
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import shutil
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import tempfile
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from galaxy.tool_util.toolbox.views.sources import StaticToolBoxViewSources
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from galaxy.util import safe_makedirs
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from .test_toolbox_view_parsing import EXAMPLE_1
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def test_from_dicts():
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sources = StaticToolBoxViewSources(view_dicts=[EXAMPLE_1])
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defs = sources.get_definitions()
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assert len(defs) == 1
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assert defs[0].id == "rna"
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def test_from_directory():
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target_dir = tempfile.mkdtemp()
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dir_1 = os.path.join(target_dir, "dir1")
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dir_2 = os.path.join(target_dir, "dir2")
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safe_makedirs(dir_1)
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safe_makedirs(dir_2)
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with open(os.path.join(dir_1, "foo.json"), "w") as f:
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json.dump(EXAMPLE_1, f)
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with open(os.path.join(dir_2, "seqanalysis.yml"), "w") as f:
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f.write(
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"""
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name: Sequence Analysis
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type: generic
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items:
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- type: workflow
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id: 12345abcd
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"""
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)
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config_param = f"{os.path.abspath(dir_1)},{os.path.abspath(dir_2)}"
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try:
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sources = StaticToolBoxViewSources(view_directories=config_param)
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defs = sources.get_definitions()
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assert len(defs) == 2
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assert defs[0].id == "rna"
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assert defs[1].id == "seqanalysis"
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finally:
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shutil.rmtree(target_dir)
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