mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-10-16 07:19:13 +08:00
36 lines
956 B
Python
36 lines
956 B
Python
import tempfile
|
|
from typing import (
|
|
Any,
|
|
Dict,
|
|
)
|
|
|
|
from edam_ontology.streams import tabular_stream
|
|
|
|
from galaxy.tool_util.edam_util import load_edam_tree
|
|
|
|
|
|
def test_load_edam_tree():
|
|
tree = load_edam_tree()
|
|
_verify_tree(tree)
|
|
|
|
|
|
def test_load_edam_tree_from_path():
|
|
tf = tempfile.NamedTemporaryFile("w")
|
|
tf.write(tabular_stream().read())
|
|
tf.flush()
|
|
tree = load_edam_tree(tf.name)
|
|
_verify_tree(tree)
|
|
|
|
|
|
def _verify_tree(tree: Dict[str, Any]):
|
|
assert tree is not None
|
|
assert "operation_0004" in tree
|
|
assert "topic_3974" in tree
|
|
assert tree["topic_3974"]["label"] == "Epistasis"
|
|
assert tree["topic_3974"]["parents"] == ["topic_0622", "topic_3295"]
|
|
assert tree["topic_3974"]["path"] == [["topic_3391", "topic_0003"], ["topic_3070", "topic_0003"]]
|
|
assert (
|
|
tree["topic_3974"]["definition"]
|
|
== "The study of the epigenetic modifications of a whole cell, tissue, organism etc."
|
|
)
|