Files
galaxy/test/unit/tool_util/data/example_data_managers/mothur.xml
T
2022-12-20 10:35:17 -05:00

58 lines
2.3 KiB
XML

<?xml version="1.0"?>
<data_managers>
<data_manager tool_file="data_manager/data_manager_fetch_mothur_reference_data.xml" id="data_manager_mothur_fetch_reference_data">
<data_table name="mothur_aligndb">
<output>
<column name="name" />
<column name="value" output_ref="out_file" >
<move type="file">
<source>${value}</source>
<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/aligndb/${value}</target>
</move>
<value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/aligndb/${value}</value_translation>
<value_translation type="function">abspath</value_translation>
</column>
</output>
</data_table>
<data_table name="mothur_lookup">
<output>
<column name="name" />
<column name="value" output_ref="out_file" >
<move type="file">
<source>${value}</source>
<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/lookup/${value}</target>
</move>
<value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/lookup/${value}</value_translation>
<value_translation type="function">abspath</value_translation>
</column>
</output>
</data_table>
<data_table name="mothur_map">
<output>
<column name="name" />
<column name="value" output_ref="out_file" >
<move type="file">
<source>${value}</source>
<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/map/${value}</target>
</move>
<value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/map/${value}</value_translation>
<value_translation type="function">abspath</value_translation>
</column>
</output>
</data_table>
<data_table name="mothur_taxonomy">
<output>
<column name="name" />
<column name="value" output_ref="out_file" >
<move type="file">
<source>${value}</source>
<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/taxonomy/${value}</target>
</move>
<value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/taxonomy/${value}</value_translation>
<value_translation type="function">abspath</value_translation>
</column>
</output>
</data_table>
</data_manager>
</data_managers>