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111 lines
4.1 KiB
Python
111 lines
4.1 KiB
Python
""" Tests for tool parameters, more tests exist in test_data_parameters.py and
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test_select_parameters.py.
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"""
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from galaxy import model
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from galaxy.app_unittest_utils.tools_support import datatypes_registry
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from galaxy.model.base import transaction
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from galaxy.util import bunch
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from .util import BaseParameterTestCase
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class TestDataColumnParameter(BaseParameterTestCase):
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def test_not_optional_by_default(self):
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assert not self.__param_optional()
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def test_force_select_disable(self):
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self.other_attributes = 'force_select="false"'
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assert self.__param_optional()
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def test_optional_override(self):
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self.other_attributes = 'optional="true"'
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assert self.__param_optional()
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def __param_optional(self):
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# TODO: don't break abstraction, try setting null value instead
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return self.param.optional
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def test_from_json(self):
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value = self.param.from_json("3", self.trans, {"input_tsv": self.build_ready_hda()})
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assert value == "3"
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def test_from_json_strips_c(self):
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value = self.param.from_json("c1", self.trans, {"input_tsv": self.build_ready_hda()})
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assert value == "1"
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def test_multiple_from_json(self):
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self.multiple = True
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value = self.param.from_json("1,2,3", self.trans, {"input_tsv": self.build_ready_hda()})
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assert value == ["1", "2", "3"]
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def test_multiple_from_json_with_c(self):
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self.multiple = True
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value = self.param.from_json("c1,c2,c3", self.trans, {"input_tsv": self.build_ready_hda()})
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assert value == ["1", "2", "3"]
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def test_get_initial_value_default(self):
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assert "1" == self.param.get_initial_value(self.trans, {"input_tsv": self.build_ready_hda()})
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def test_get_initial_value_override_legacy(self):
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self.other_attributes = "default_value='2'"
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assert "2" == self.param.get_initial_value(self.trans, {"input_tsv": self.build_ready_hda()})
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def test_get_initial_value_override_newstyle(self):
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self.other_attributes = "value='2'"
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assert "2" == self.param.get_initial_value(self.trans, {"input_tsv": self.build_ready_hda()})
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def test_get_initial_value_override_newstyle_strips_c(self):
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self.other_attributes = "value='c2'"
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assert "2" == self.param.get_initial_value(self.trans, {"input_tsv": self.build_ready_hda()})
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def setUp(self):
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super().setUp()
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self.test_history = model.History()
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self.app.model.context.add(self.test_history)
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session = self.app.model.context
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with transaction(session):
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session.commit()
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self.trans = bunch.Bunch(
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app=self.app,
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get_history=lambda: self.test_history,
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get_current_user_roles=lambda: [],
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workflow_building_mode=False,
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webapp=bunch.Bunch(name="galaxy"),
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)
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self.type = "data_column"
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self.other_attributes = ""
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self.set_data_ref = "input_tsv"
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self.multiple = False
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self.optional = False
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self._param = None
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def build_ready_hda(self):
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hist = model.History()
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self.app.model.context.add(hist)
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ready_hda = hist.add_dataset(
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model.HistoryDatasetAssociation(
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extension="interval", create_dataset=True, sa_session=self.app.model.context
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)
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)
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ready_hda.state = "ok"
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return ready_hda
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@property
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def param(self):
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if not self._param:
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multi_text = ""
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if self.multiple:
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multi_text = 'multiple="True"'
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optional_text = ""
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if self.optional:
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optional_text = 'optional="True"'
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data_ref_text = ""
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if self.set_data_ref:
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data_ref_text = 'data_ref="input_tsv"'
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param_str = f"""<param name="my_name" type="{self.type}" {data_ref_text} {multi_text} {optional_text} {self.other_attributes}></param>"""
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self._param = self._parameter_for(xml=param_str)
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self._param.ref_input = bunch.Bunch(formats=[datatypes_registry.get_datatype_by_extension("tabular")])
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return self._param
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