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Matthias Bernt
9920e0a49d
was unsure if decompress influences ftype. this test just verifies that it does not. can not hurt to have it.
101 lines
4.4 KiB
XML
101 lines
4.4 KiB
XML
<tool id="validation_tar_gz" name="Validation (tar.gz)" version="1.0">
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<!-- tool tests for assertions on gzipped outputs
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also tests that test outputs can be given multiple times
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(eg to specify assertions on compressed and upcompressed data)-->
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<command><![CDATA[
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cat '$input' > '$output'
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]]></command>
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<inputs>
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<param name="input" type="data" />
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</inputs>
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<outputs>
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<data name="output" format_source="input"/>
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</outputs>
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<tests>
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<test>
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<param name="input" value="1.fastqsanger.gz" ftype="fastqsanger.gz" />
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<output name="output" ftype="fastqsanger.gz">
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<assert_contents>
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<has_size value="161"/>
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<has_line line="@1831_573_1004/1" negate="true"/>
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</assert_contents>
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</output>
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<output name="output" decompress="true" ftype="fastqsanger.gz">
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<assert_contents>
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<has_size value="177"/>
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<has_line line="@1831_573_1004/1"/>
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</assert_contents>
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</output>
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</test>
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<!-- assure that the assertions of the 2nd use of the output named "output" are considered -->
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<test expect_test_failure="true">
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<param name="input" value="1.fastqsanger.gz" />
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<output name="output">
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<assert_contents>
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<has_size value="161"/>
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<has_line line="@1831_573_1004/1" negate="true"/>
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</assert_contents>
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</output>
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<output name="output" decompress="true">
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<assert_contents>
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<has_size value="1M"/>
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<has_line line="I'm not here"/>
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</assert_contents>
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</output>
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</test>
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<test>
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<param name="input" value="testdir1.tar.gz" />
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<!-- decompression works only for .gz but not .tar.gz
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hence has_size is the same as for decompress="false"-->
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<output name="output" decompress="true">
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<assert_contents>
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<has_size value="10240"/>
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</assert_contents>
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</output>
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<output name="output">
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<assert_contents>
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<has_size value="10240"/>
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<!-- Test 0: Empty tag, checks for presence of member -->
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<has_archive_member path="testdir1/file1"></has_archive_member>
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<!-- Test 1: explicit filename matching with sub-assertions-->
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<has_archive_member path="testdir1/file1">
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<has_line_matching expression="hello" />
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</has_archive_member>
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<has_archive_member path="testdir1/file2">
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<has_line_matching expression="world" />
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</has_archive_member>
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<has_archive_member path="testdir1/dir1/file3">
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<has_line_matching expression="subdirfile" />
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</has_archive_member>
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<!-- Test 2: regex filename matching with sub-assertions-->
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<has_archive_member path=".*file1">
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<has_line_matching expression="hello" />
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</has_archive_member>
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<has_archive_member path=".*file2">
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<has_line_matching expression="world" />
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</has_archive_member>
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<has_archive_member path=".*dir1/file3">
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<has_line_matching expression="subdirfile" />
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</has_archive_member>
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<has_archive_member path=".*file3">
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<has_line_matching expression="subdirfile" />
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</has_archive_member>
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<has_archive_member path=".*dir1.*file.*">
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<has_line_matching expression="subdirfile" />
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</has_archive_member>
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<!-- Test 3: multiple sub-assertions -->
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<has_archive_member path="testdir1/file1">
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<has_text text="hello" />
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<not_has_text text="goodbye" />
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<has_text_matching expression="hello" />
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<has_line_matching expression="hello" />
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</has_archive_member>
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</assert_contents>
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</output>
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</test>
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</tests>
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</tool>
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