mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Matthias Bernt
a60a231b28
I guess test data is referred by the file name. This leads to a clash with the dbkeys.
38 lines
1.8 KiB
XML
38 lines
1.8 KiB
XML
<tool id="validation_metadata_in_datatable" name="validation_metadata_in_datatable" profile="21.09" version="0.1">
|
|
<command><![CDATA[
|
|
echo 'Hello World' > out1
|
|
]]></command>
|
|
<inputs>
|
|
<!-- test dataset_metadata_in_data_table validator with and without negation
|
|
we simply use dbkey as metadata field here -->
|
|
<param name="value" type="data" format="data">
|
|
<validator type="dataset_metadata_in_data_table" table_name="test_fasta_indexes" metadata_column="1" metadata_name="dbkey"/>
|
|
</param>
|
|
<param name="value_neg" type="data" format="data">
|
|
<validator type="dataset_metadata_in_data_table" table_name="test_fasta_indexes" metadata_column="1" metadata_name="dbkey" negate="true"/>
|
|
</param>
|
|
<!-- also test deprecated dataset_metadata_not_in_data_table validator-->
|
|
<param name="value_neg_deprecated" type="data" format="data">
|
|
<validator type="dataset_metadata_not_in_data_table" table_name="test_fasta_indexes" metadata_column="1" metadata_name="dbkey"/>
|
|
</param>
|
|
</inputs>
|
|
<outputs>
|
|
<data name="out_file1" format="txt" from_work_dir="out1"/>
|
|
</outputs>
|
|
<tests>
|
|
<!-- hg19 is in the test data table and hg38 not-->
|
|
<test expect_failure="false">
|
|
<param name="value" value="1.fasta" dbkey="hg19"/>
|
|
<param name="value_neg" value="2.fasta" dbkey="hg38"/>
|
|
<param name="value_neg_deprecated" value="3.bed" dbkey="hg38"/>
|
|
</test>
|
|
<test expect_failure="true">
|
|
<param name="value" value="1.fasta" dbkey="hg38"/> <!-- hg38 is not in the test data table-->
|
|
<param name="value_neg" value="2.fasta" dbkey="hg19"/>
|
|
<param name="value_neg_deprecated" value="3.bed" dbkey="hg19"/>
|
|
</test>
|
|
</tests>
|
|
<help>
|
|
</help>
|
|
</tool>
|