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21 lines
688 B
XML
21 lines
688 B
XML
<tool id="sam_to_conversion" name="Test sam to bam conversion">
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<command><![CDATA[
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cat '$input1' > '$out_file1'
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]]></command>
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<inputs>
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<param name="input1" type="data" format="bam" label="Concatenate Dataset"/>
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</inputs>
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<outputs>
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<data name="out_file1" format="bam"/>
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</outputs>
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<tests>
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<test>
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<param name="input1" value="sam_with_header.sam" ftype="sam"/>
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<!-- allow up to 2 differences (4 lines) due to version change of the implicitly running converter -->
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<output name="out_file1" file="bam_from_sam.bam" ftype="bam" lines_diff="4"/>
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</test>
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</tests>
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<help>
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</help>
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</tool>
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