galaxy/test/functional/tools/inputs_as_json_with_paths.xml

<tool id="inputs_as_json_with_paths" name="inputs_as_json_with_paths" version="1.0.0" profile="18.09">
    <command detect_errors="exit_code">
        python '$check_inputs' '$inputs' $test_case
    </command>
    <configfiles>
        <inputs name="inputs" data_style="paths" />
        <!-- Can specify with fixed path in working directory instead:
        <inputs name="inputs" filename="input.json" />
        -->
        <configfile name="check_inputs"><![CDATA[
import json
import sys

input_json_path = sys.argv[1]
test_case = sys.argv[2]
as_dict = json.load(open(input_json_path, "r"))


def assert_equals(x, y):
    assert x == y, "%s[%s] != %s[%s] " % (x, type(x), y, type(y))

if test_case == "1":
    assert_equals(as_dict["test_case"], 1)
    assert_equals(as_dict["text_test"], "foo")
    assert_equals(as_dict["booltest"], True)
    assert_equals(as_dict["booltest2"], True)
    assert_equals(as_dict["inttest"], 12456)
    assert_equals(as_dict["floattest"], 6.789)
    assert_equals(as_dict["radio_select"], "a_radio")
    assert_equals(as_dict["repeat"][0]["r"], "000000")
    assert_equals(as_dict["repeat"][1]["r"], "FFFFFF")
    assert_equals(as_dict["cond"]["more_text"], "fdefault")
    assert_equals(as_dict["section_example"]["section_text"], "section_default")
    assert_equals(as_dict["data_input"], None)
    assert_equals(as_dict["multiple_data_input"], [None])
    assert as_dict["collection_input"] == []
elif test_case == "2":
    assert_equals(as_dict["test_case"], 2)
    assert_equals(as_dict["text_test"], "bar")
    assert_equals(as_dict["booltest"], False)
    assert_equals(as_dict["booltest2"], False)
    assert_equals(as_dict["inttest"], None)
    assert_equals(as_dict["floattest"], 1.0)
    assert_equals(as_dict["radio_select"], "a_radio")
    assert_equals(as_dict["repeat"][0]["r"], "000000")
    assert_equals(as_dict["cond"]["cond_test"], "second")
    assert_equals(as_dict["cond"]["more_text"], "sdefault")
    assert_equals(as_dict["section_example"]["section_text"], "section_default")
    data_input = as_dict["data_input"]
    assert data_input is not None
    multiple_data_input = as_dict["multiple_data_input"]
    assert type(multiple_data_input) is list
    assert len(multiple_data_input) == 2
    assert as_dict["collection_input"] == []
elif test_case == "3":
    collection_input = as_dict["collection_input"]
    assert type(collection_input) is list
    assert len(collection_input) == 1

with open("output", "w") as f:
    f.write("okay\n")
]]></configfile>
    </configfiles>
    <inputs>
        <param name="test_case" type="integer" value="0" />
        <param name="text_test" type="text" />
        <param name="booltest" truevalue="booltrue" falsevalue="boolfalse" checked="false" type="boolean" />
        <param name="booltest2" truevalue="booltrue" falsevalue="boolfalse" checked="false" type="boolean" />
        <param name="inttest" type="integer" optional="true" />
        <param name="floattest" value="1.0" type="float" />
        <param name="radio_select" type="select" display="radio">
            <option value="a_radio" selected="true">A Radio</option>
            <option value="b_radio">B Radio</option>
            <option value="c_radio">C Radio</option>
        </param>
        <param name="data_input" type="data" optional="true" />
        <param name="multiple_data_input" type="data" optional="true" multiple="true" />
        <param name="collection_input" type="data_collection" optional="true"/>
        <repeat name="repeat" title="Repeat" min="1">
            <param name="r" type="color" />
        </repeat>
        <conditional name="cond">
            <param name="cond_test" type="select">
                <option value="first" selected="true">First</option>
                <option value="second">Second</option>
            </param>
            <when value="first">
                <param name="more_text" type="text" value="fdefault" />
            </when>
            <when value="second">
                <param name="more_text" type="text" value="sdefault" />
            </when> 
        </conditional>
        <section name="section_example" title="Section Example">
            <param name="section_text" type="text" value="section_default" />
        </section>
    </inputs>
    <outputs>
        <data name="out_file1" from_work_dir="output" format="txt" />
    </outputs>
    <tests>
        <test>
            <param name="test_case" value="1" />
            <param name="text_test" value="foo" />
            <param name="booltest" value="true" />
            <param name="booltest2" value="booltrue" />
            <param name="inttest" value="12456" />
            <param name="floattest" value="6.789" />
            <repeat name="repeat">
                <param name="r" value="000000"/>
            </repeat>
            <repeat name="repeat">
                <param name="r" value="FFFFFF"/>
            </repeat>
            <conditional name="cond">
                <param name="cond_test" value="first" />
            </conditional>
            <output name="out_file1">
                <assert_contents>
                    <has_line line="okay" />
                </assert_contents>
            </output>
        </test>
        <test>
            <param name="test_case" value="2" />
            <param name="text_test" value="bar" />
            <param name="booltest" value="false" />
            <param name="booltest2" value="boolfalse" />
            <param name="data_input" value="simple_line.txt" />
            <param name="multiple_data_input" value="simple_line.txt,simple_line_alternative.txt" />
            <!-- Testing null integers -->
            <!-- <param name="inttest" value="12456" /> -->
            <param name="r" value="000000" />
            <conditional name="cond">
                <param name="cond_test" value="second" />
            </conditional>
            <output name="out_file1">
                <assert_contents>
                    <has_line line="okay" />
                </assert_contents>
            </output>
        </test>
        <test>
            <param name="test_case" value="3" />
            <param name="text_test" value="foo" />
            <param name="collection_input">
                <collection type="list:list">
                    <element name="list">
                        <collection type="list">
                            <element name="element1" value="simple_line.txt" ftype="txt" />
                        </collection>
                    </element>
                </collection>
            </param>
        </test>
    </tests>
    <help>
        Test tool demonstrating the special inputs config file.
    </help>
</tool>