mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Matthias Bernt
e7f94384db
loading the test tool failed with:
```
galaxy.tools ERROR 2023-02-01 21:26:03,095 [pN:main,p:50706,tN:WSGI_0] Failed to parse tool tests for tool 'expression_pick_larger_file'
Traceback (most recent call last):
File "/home/berntm/projects/galaxy/lib/galaxy/tools/__init__.py", line 1193, in tests
self.__tests = parse_tests(self, tests_source)
File "/home/berntm/projects/galaxy/lib/galaxy/tools/test.py", line 31, in parse_tests
raw_tests_dict = tests_source.parse_tests_to_dict()
File "/home/berntm/projects/galaxy/lib/galaxy/tool_util/parser/xml.py", line 556, in parse_tests_to_dict
tests.append(_test_elem_to_dict(test_elem, i, profile))
File "/home/berntm/projects/galaxy/lib/galaxy/tool_util/parser/xml.py", line 602, in _test_elem_to_dict
inputs=__parse_input_elems(test_elem, i),
File "/home/berntm/projects/galaxy/lib/galaxy/tool_util/parser/xml.py", line 619, in __parse_input_elems
return __parse_inputs_elems(test_elem, i)
File "/home/berntm/projects/galaxy/lib/galaxy/tool_util/parser/xml.py", line 837, in __parse_inputs_elems
raw_inputs.append(__parse_param_elem(param_elem, i))
File "/home/berntm/projects/galaxy/lib/galaxy/tool_util/parser/xml.py", line 850, in __parse_param_elem
value = json.loads(attrib["value_json"])
File "/usr/lib/python3.10/json/__init__.py", line 346, in loads
return _default_decoder.decode(s)
File "/usr/lib/python3.10/json/decoder.py", line 337, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File "/usr/lib/python3.10/json/decoder.py", line 355, in raw_decode
raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
```
45 lines
1.6 KiB
XML
45 lines
1.6 KiB
XML
<tool name="expression_pick_larger_file" id="expression_pick_larger_file"
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version="0.1.0" tool_type="expression">
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<expression type="ecma5.1"><![CDATA[
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{
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var input1 = $job.input1;
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var input2 = $job.input2;
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var input1_size = input1 && input1.file_size;
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var input2_size = input2 && input2.file_size;
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var output;
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if( !input2 || !input2_size || input1_size >= input2_size ) {
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output = input1.src;
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} else {
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output = input2.src;
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}
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return {'output': output};
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}
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]]></expression>
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<inputs>
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<param name="input1" type="data" optional="true" label="First file" />
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<param name="input2" type="data" optional="true" label="Second file" />
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</inputs>
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<outputs>
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<output name="larger_file" type="data" from="output" />
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</outputs>
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<tests>
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<test>
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<param name="input1" value="simple_line.txt" />
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<param name="input2" value="simple_line_alternative.txt" />
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<output name="larger_file" file="simple_line_alternative.txt"/>
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</test>
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<test>
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<param name="input1" value="simple_line_alternative.txt" />
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<param name="input2" value_json="null" />
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<output name="larger_file" file="simple_line_alternative.txt"/>
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</test>
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<test>
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<param name="input1" value_json="null" />
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<param name="input2" value_json=""simple_line.txt"" />
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<output name="larger_file" file="simple_line.txt"/>
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</test>
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</tests>
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<help>
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</help>
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</tool>
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