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38 lines
1.5 KiB
XML
38 lines
1.5 KiB
XML
<tool id="collection_creates_pair" name="collection_creates_pair" version="0.1.0">
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<command>
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sed 'n;d' $input1 > $forward ;
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sed -n 'g;n;p' $input1 > "reverse.txt";
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</command>
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<inputs>
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<param name="input1" type="data" label="Input" help="Input to be split." />
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</inputs>
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<outputs>
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<collection name="paired_output" type="paired" label="Split Pair">
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<!-- command can reference parts directly or find via from_work_dir. -->
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<data name="forward" format="txt" />
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<data name="reverse" format_source="input1" from_work_dir="reverse.txt" />
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<!-- data elements can use format, format_source, metadata_from,
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from_work_dir. The format="input" idiom is not supported,
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it should be considered deprecated and format_source is superior.
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-->
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</collection>
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</outputs>
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<tests>
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<test>
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<param name="input1" ftype="bed" value="simple_lines_interleaved.txt" />
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<output_collection name="paired_output" type="paired">
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<element name="forward" ftype="txt">
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<assert_contents>
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<has_text_matching expression="^This is a line of text.\nThis is a line of text.\n$" />
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</assert_contents>
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</element>
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<element name="reverse" ftype="bed">
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<assert_contents>
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<has_text_matching expression="^This is a different line of text.\nThis is a different line of text.\n$" />
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</assert_contents>
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</element>
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</output_collection>
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</test>
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</tests>
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</tool>
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