mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-01 15:37:32 +08:00
Carl Eberhard
55 lines
1.7 KiB
Python
Executable File
55 lines
1.7 KiB
Python
Executable File
"""
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Creates the initial galaxy database schema using the settings defined in
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universe_wsgi.ini.
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This script is also wrapped by create_db.sh.
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.. note: pass '-c /location/to/your_config.ini' for non-standard ini file
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locations.
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.. note: if no database_connection is set in universe_wsgi.ini, the default,
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sqlite database will be constructed.
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Using the database_file setting in universe_wsgi.ini will create the file
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at the settings location (??)
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.. seealso: universe_wsgi.ini, specifically the settings: database_connection
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and database file
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"""
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import sys, os.path, logging
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new_path = [ os.path.join( os.getcwd(), "lib" ) ]
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new_path.extend( sys.path[1:] ) # remove scripts/ from the path
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sys.path = new_path
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from galaxy import eggs
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from galaxy.model.migrate.check import create_or_verify_database as create_db
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import pkg_resources
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from ConfigParser import SafeConfigParser
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log = logging.getLogger( __name__ )
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# Poor man's optparse
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config_file = 'universe_wsgi.ini'
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if '-c' in sys.argv:
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pos = sys.argv.index( '-c' )
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sys.argv.pop(pos)
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config_file = sys.argv.pop( pos )
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if not os.path.exists( config_file ):
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print "Galaxy config file does not exist (hint: use '-c config.ini' for non-standard locations): %s" % config_file
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sys.exit( 1 )
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cp = SafeConfigParser()
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cp.read( config_file )
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if cp.has_option( "app:main", "database_connection" ):
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db_url = cp.get( "app:main", "database_connection" )
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elif cp.has_option( "app:main", "database_file" ):
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db_url = "sqlite:///%s?isolation_level=IMMEDIATE" % cp.get( "app:main", "database_file" )
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else:
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db_url = "sqlite:///./database/universe.sqlite?isolation_level=IMMEDIATE"
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create_db(db_url, config_file)
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