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mvdbeek d938357d8e Update virtualenv
2022-02-11 17:25:50 +01:00
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api
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auth
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cleanup_datasets
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grt
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interactivetools
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loc_files
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metagenomics
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microbes
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objectstore
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slideshow
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taxonomy
Tweaks to taxonomy tools
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tool_shed
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tools
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__init__.py
Adding db_shell.py that can be used to simplify writing command line
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apply_tags.py
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bootstrap_history.py
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build_toolbox.py
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celery_shell.py
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check_eggs.py
Add stub fetch_eggs.py/check_eggs.py for people whose build/test/run
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check_model.py
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check_python.py
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common_startup_functions.sh
Only set $GALAXY_DAEMON_LOG when using gravity since other servers have
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common_startup.sh
Update virtualenv
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config_sample_to_kwalify.py
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create_db.py
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cwl_conformance_to_test_cases.py
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db_shell.py
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docker_swarm_manager.py
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drmaa_external_killer.py
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drmaa_external_runner.py
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dump_library_paths.py
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edam_mapping.py
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external_chown_script.py
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extract_dataset_part.py
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extract_toolbox_sections.py
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fetch_eggs.py
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fix_dm_versions.py
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functional_tests.py
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galaxy
Make Galaxy installable the Pythonic way via setup.py. Incomplete, but
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galaxy_main.py
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galaxy_schemadisp.py
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galaxy-main
Adjust galaxy-main script so we can import from it for easy app setup
2020-12-22 11:18:00 +01:00
get_platforms.py
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get_uwsgi_args.py
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helper.py
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maintenance.sh
Fix issues reported by ShellCheck
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manage_db.py
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manage_tool_dependencies.py
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nosetests.py
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pages_identifier_conversion.py
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paster.py
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patch.sh
Add the script I used to create security patches
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plugin_staging.py
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release-diff.py
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release.sh
Test Galaxy release script
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resumable_upload.py
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rst2html.py
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runtime_stats.py
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secret_decoder_ring.py
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set_dataset_sizes.py
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set_user_disk_usage.py
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summarize_timings.py
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tests_markdown_compare.tpl
Performance metrics for tests.
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tests_markdown.py
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tests_markdown.tpl
Performance metrics for tests.
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update_cwl_conformance_tests.sh
Add CWL conformance API tests
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update_shed_config_path.py
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validate_tools.sh
Switch to lxml for xml parsing
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