mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Nicola Soranzo
21b44bf348
using the following command: ``` autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E201,E202 . ```
55 lines
1.7 KiB
Python
Executable File
55 lines
1.7 KiB
Python
Executable File
#!/usr/bin/env python
|
|
"""
|
|
Upload a file to the desired history.
|
|
"""
|
|
from __future__ import print_function
|
|
|
|
import json
|
|
import os
|
|
import sys
|
|
|
|
try:
|
|
import requests
|
|
except ImportError:
|
|
print("Could not import the requests module. See http://docs.python-requests.org/en/latest/" +
|
|
" or install with 'pip install requests'")
|
|
raise
|
|
|
|
|
|
def upload_file(base_url, api_key, history_id, filepath, **kwargs):
|
|
full_url = base_url + '/api/tools'
|
|
|
|
payload = {
|
|
'key' : api_key,
|
|
'tool_id' : 'upload1',
|
|
'history_id' : history_id,
|
|
}
|
|
inputs = {
|
|
'files_0|NAME' : kwargs.get('filename', os.path.basename(filepath)),
|
|
'files_0|type' : 'upload_dataset',
|
|
# TODO: the following doesn't work with tools.py
|
|
'dbkey' : '?',
|
|
'file_type' : kwargs.get('file_type', 'auto'),
|
|
'ajax_upload' : 'true',
|
|
}
|
|
payload['inputs'] = json.dumps(inputs)
|
|
|
|
response = None
|
|
with open(filepath, 'rb') as file_to_upload:
|
|
files = {'files_0|file_data': file_to_upload}
|
|
response = requests.post(full_url, data=payload, files=files)
|
|
return response.json()
|
|
|
|
|
|
if __name__ == '__main__':
|
|
if len(sys.argv) < 5:
|
|
print("history_upload.py <api key> <galaxy base url> <history id> <filepath to upload>\n" +
|
|
" (where galaxy base url is just the root url where your Galaxy is served; e.g. 'localhost:8080')")
|
|
sys.exit(1)
|
|
|
|
api_key, base_url, history_id, filepath = sys.argv[1:5]
|
|
kwargs = dict([kwarg.split('=', 1) for kwarg in sys.argv[5:]])
|
|
|
|
response = upload_file(base_url, api_key, history_id, filepath, **kwargs)
|
|
print(response, file=sys.stderr)
|