Kelly Vincent d6deb67bf2 Added -h flag to samtools view command in functional test's bam to sam conversion so that it keeps the header

2011-04-22 14:58:44 -04:00

..

base

Added -h flag to samtools view command in functional test's bam to sam conversion so that it keeps the header

2011-04-22 14:58:44 -04:00

functional

Improved checking to determine if a bam file is sorted. If the version of samtools being used is 0.1.13 or newer, determination of bam sorting is now much more robust. Add a new functional test to the test_library_features script that tests uploading a library_dataset (where the file is an unsorted bam file) using a combination of 'upload_paths' and 'link_to_files'. Rename the test-data file previously named 3.bam to now be named 3unsorted.bam to clarify that it is an unsorted bam file.

2011-03-23 12:18:57 -04:00

selenium

trackster:

2010-07-26 12:26:39 -04:00