Jianbin He af5615424f add a new section, pattern-matching, and a new tool, find-cluster

2007-04-13 21:04:32 +00:00

..

data_source

Made necessary modifications to /lib/galaxy/tools/__init__.py and added the test input and output files for "Display customtrack at UCSC" tool.

2007-04-13 15:58:39 +00:00

emboss

Add descriptions to tool EMBOSS:needle.

2007-04-02 19:05:30 +00:00

encode

Remove extraneous comment

2007-03-15 20:35:48 +00:00

extract

Add Gene bed and maf to fasta tool.

2007-04-10 16:11:04 +00:00

filters

Add Gene bed and maf to fasta tool.

2007-04-10 16:11:04 +00:00

hyphy

HYPHY nj tree builder now also makes species-only-labeled trees as well

2007-04-06 13:58:24 +00:00

mdea

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

new_operations

Adding tool "Display customtracks at UCSC" under Graph/Display data tab. I've added new param attributes called repeat (to repeat the param a certain number of times) and condition (to display or not display the param) and have added dynamic_options for type "data" in order to facilitate multiple data selection. These changes required certain modifications in the framework (/lib/galaxy/tools/__init__.py and parameters.py , /lib/galaxy/datatypes/interval.py and in templates/tool_form.tmpl). I ran functional tests and found no errors in any of the tools due to these modifications. There were the usual assertion errors and database errors.

2007-04-12 16:52:39 +00:00

patmat

add a new section, pattern-matching, and a new tool, find-cluster

2007-04-13 21:04:32 +00:00

plotting

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

stats

Some corrections for tracking referrals. Eliminated the referer column from the event table as it is not needed.

2007-04-10 16:07:53 +00:00

validation

bug squashed: python != python2.4. Thanks Nate

2007-03-12 20:34:02 +00:00

visualization

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00