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Fix the following traceback when executing `planemo shed_update`:
```
galaxy.web.framework.decorators ERROR 2018-10-15 18:07:38,736 [p:30249,w:1,m:0] [uWSGIWorker1Core1] Uncaught exception in exposed API method:
Traceback (most recent call last):
File "lib/galaxy/web/framework/decorators.py", line 154, in decorator
rval = func(self, trans, *args, **kwargs)
File "lib/galaxy/webapps/tool_shed/api/repositories.py", line 1116, in create_changeset_revision
new_repo_alert
File "lib/tool_shed/util/repository_content_util.py", line 64, in upload_tar
undesirable_files_removed)
File "lib/tool_shed/util/commit_util.py", line 225, in handle_directory_changes
message=commit_message)
File "lib/tool_shed/util/hg_util.py", line 65, in commit_changeset
raise Exception(error_message)
Exception: Error committing '/opt/galaxy/database/community_files/000/repo_1' to repository: Command '['hg', 'commit', '-u', u'earlhaminst', '-m', u'planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/TreeBest commit 22231ebc4e5e990c61243a3609b3347cf63fa024', '/opt/galaxy/database/community_files/000/repo_1']' returned non-zero exit status 1
Output was:
nothing changed
127.0.0.1 - - [15/Oct/2018:18:07:38 +0100] "POST /api/repositories/adb5f5c93f827949/changeset_revision HTTP/1.1" 500 - "-" "python-requests/2.18.4"
```