Daniel Blankenberg 2c05491514 A script to update a pre-security/library Galaxy database with necessary schema changes and set default roles/permissions for users and their histories and datasets. ...

It will reset permissions on histories and datasets if they are already set (i.e. script was run on a database which already has security/library tables).

This has been tested with Postgres, SQLite, and MySQL databases.

Due to limitations of SQLite this script is unable to add foreign keys to existing SQLite tables (fks are ignored anyway).

*** Remember to backup your database before running. ***

2008-12-11 14:10:11 -05:00

..

cleanup_datasets

Refix cleanup_dataset.py script.

2008-12-01 14:07:36 -05:00

metagenomics

add scripts for preparing nt and wgs databases.

2008-03-27 17:41:40 +00:00

microbes

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

others

Fix a bug I missed in my last commit.

2008-11-12 15:42:46 -05:00

scramble/scripts

Use LD_RUN_PATH when building pbs_python

2008-10-30 16:11:44 -04:00

taxonomy

Finalizing taxonomy. Removed taxonomy processing from scripts. This does not require sqlite anymore. Script for fetching taxonomy now uses flat files directly and is much faster

2008-03-20 19:38:31 +00:00

update_database

A script to update a pre-security/library Galaxy database with necessary schema changes and set default roles/permissions for users and their histories and datasets.

2008-12-11 14:10:11 -05:00

check_eggs.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

check_galaxy.py

Update check_galaxy for new twill.

2008-09-25 10:19:56 -04:00

dist-scramble.py

dist-scramble, scrambles eggs for distribution.

2008-05-02 17:05:40 +00:00

fetch_eggs.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

get_platforms.py

Some Fixes for setting permisions on the current history when users login, and some preparation for the database update script.

2008-12-03 17:16:40 -05:00

get_python.sh

The enormous eggs-out-of-svn commit. More details at:

2008-03-27 19:27:05 +00:00

nosetests.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

paster.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

rst2html.py

Cleaning up modules. Still a few stragglers that can't be easily eggified.

2006-11-15 18:27:21 +00:00

scramble.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

yuicompressor.jar

Upgrade yuicompresor to version 2.3.5

2008-05-01 15:05:30 +00:00