mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-01 05:31:04 +08:00
Nicola Soranzo
21b44bf348
using the following command: ``` autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E201,E202 . ```
84 lines
3.1 KiB
Python
84 lines
3.1 KiB
Python
from __future__ import print_function
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import os
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import sys
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# read tool_conf.xml to get all the tool xml file names
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onoff = 1
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tool_list = []
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tool_conf_file = os.environ.get('GALAXY_TEST_TOOL_CONF', None)
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if tool_conf_file is None:
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for possible_tool_file in ['config/tool_conf.xml', 'tool_conf.xml', 'config/tool_conf.xml.sample']:
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tool_conf_file = possible_tool_file
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if os.path.isfile(possible_tool_file):
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break
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if tool_conf_file is None or not os.path.isfile(tool_conf_file):
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sys.stderr.write("Tool config file not found: {}\n".format(tool_conf_file))
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sys.exit(1)
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for line in open(tool_conf_file, "r"):
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if line.find("<!--") != -1:
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onoff = 0
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if line.find("file") != -1 and onoff == 1:
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strs = line.split('\"')
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tool_list.append(strs[1])
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if line.find("<section") != -1 and onoff == 1:
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keys = line.strip().split('\"')
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n = 0
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strtmp = "section::"
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while n < len(keys):
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if keys[n].find("id") != -1:
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strtmp = strtmp + keys[n + 1]
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if keys[n].find("name") != -1:
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strtmp = strtmp + keys[n + 1] + "-"
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n = n + 1
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tool_list.append(strtmp.replace(' ', '_'))
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if line.find("-->") != -1:
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onoff = 1
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# read tool info from every tool xml file
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name = []
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id = []
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desc = []
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tool_infos = []
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for tool in tool_list:
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if tool.find("section") != -1:
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tool_info = dict()
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tool_info["id"] = tool
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tool_infos.append(tool_info)
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if os.path.exists("tools/" + tool):
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for line in open("tools/" + tool):
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if line.find("<tool ") != -1 and line.find("id") != -1:
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keys = line.strip().split('\"')
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tool_info = dict()
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tool_info["desc"] = ''
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for n in range(len(keys) - 1):
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if " id=" in keys[n]:
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tool_info["id"] = keys[n + 1].replace(' ', '_')
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if " name=" in keys[n]:
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tool_info["name"] = keys[n + 1]
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if " description=" in keys[n]:
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tool_info["desc"] = keys[n + 1]
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tool_infos.append(tool_info)
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break
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flag = 0
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if len(sys.argv) == 1:
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for tool_info in tool_infos:
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if tool_info["id"].find("section") != -1:
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print("===========================================================================================================================================")
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print("%-45s\t%-40s\t%s" % ("id", "name", tool_info["id"]))
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print("- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -")
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else:
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print("%-45s\t%-40s" % (tool_info["id"], tool_info["name"]))
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else:
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for tool_info in tool_infos:
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if tool_info["id"].find("section") != -1:
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flag = 0
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elif flag == 1:
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print(" functional.test_toolbox:TestForTool_%s" % tool_info["id"], end=' ')
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if tool_info["id"].replace('section::', '') == sys.argv[1]:
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flag = 1
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