galaxy

access_libraries.xml

Fix for rendering tools / workflows in target frames, also elimnate the Workflow link in the tool panel as we're now using the menu bar.

2009-02-23 13:52:34 -05:00

bed_convert.xml

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

biomart_test.xml

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

biomart.xml

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

data_source.py

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

echo.py

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

echo.xml

Change History.copy() back to use datasets rather than active_datasets. Add checks in set_peek() to properly set peek on purged datasets. Fixes sharing a history that contains purged datasets.

2009-01-15 10:49:01 -05:00

encode_db.xml

Change database schema to separate Dataset and HistoryDatasetAssociation. This is a significant change, be sure to follow the migration notes exactly.

2008-07-09 17:41:08 +00:00

encode_import_all_latest_datasets.xml

Small typo in one of the encode import tools.

2008-10-31 14:52:41 -04:00

encode_import_chromatin_and_chromosomes.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

encode_import_code.py

merging from central

2008-12-02 10:55:17 -05:00

encode_import_gencode.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

encode_import_genes_and_transcripts.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

encode_import_multi-species_sequence_analysis.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

encode_import_transcription_regulation.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

encode_import.py

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

epigraph_import_test.xml

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

epigraph_import.xml

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

eupathdb.xml

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

fetch.py

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

flymine_test.xml

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

flymine.xml

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

genbank.py

Deprecated code corrections for supporting Python 2.6. Many of the Python 2.6 eggs are still throwing DeprecationWarning messages, so some things still won't work. Eggs for 2.6 need to be re-scrambled after corrections are made.

2009-08-14 15:37:31 -04:00

genbank.xml

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

gramene_mart.xml

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

hbvar_filter.py

Call set_size() before set_peek() on datasets, changes to set_peek() to not read entire files for some datatypes.

2008-12-02 10:50:54 -05:00

hbvar.xml

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

import.py

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

import.xml

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

microbial_import_code.py

merging from central

2008-12-02 10:55:17 -05:00

microbial_import.py

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

microbial_import.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

ucsc_archaea.xml

There has to be at least one tool named 'ucsc_proxy' for the proxies to work. They all use the same code with different urls, but they have to submit back to the tool_runner at the end. This closes ticket 121.

2007-05-30 15:47:59 +00:00

ucsc_filter.py

Call set_size() before set_peek() on datasets, changes to set_peek() to not read entire files for some datatypes.

2008-12-02 10:50:54 -05:00

ucsc_proxy.py

Deprecated code corrections for supporting Python 2.6. Many of the Python 2.6 eggs are still throwing DeprecationWarning messages, so some things still won't work. Eggs for 2.6 need to be re-scrambled after corrections are made.

2009-08-14 15:37:31 -04:00

ucsc_proxy.xml

Update UCSC direct connection to use main ucsc site. Add direct test

2007-03-21 19:52:01 +00:00

ucsc_tablebrowser_archaea.xml

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

ucsc_tablebrowser_test.xml

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

ucsc_tablebrowser.xml

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

ucsc_testproxy.xml

Update UCSC direct connection to use main ucsc site. Add direct test

2007-03-21 19:52:01 +00:00

upload.xml

Initial pass at allowing the setting of certain metadata parameters on upload (controlled via a flag). This allows the user to specify the 'base_name' to be used for Rgenetics datatypes, etc. Bunch of cleanup needed in upload.

2009-07-15 14:11:35 -04:00

wormbase_test.xml

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

wormbase.xml

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00