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galaxy/test/integration
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Nate Coraor db6944523f Support setting container resolvers directly in the app config
2021-08-13 15:23:30 -04:00
..
chained_dyndest_rules
fix chained dynamic destinations integration test
2021-02-25 13:49:19 +01:00
cloudauthz
Minor test cleanup
2020-09-18 12:28:33 +02:00
delay_rules
Integration test for job recovery (before and after handler has picked it up).
2018-08-21 15:17:12 -04:00
objectstore
mypy for test/
2020-12-25 17:38:51 -05:00
objectstore_selection_rules
Allow configuring object stores on a per-job-destination basis.
2018-08-06 11:29:08 -04:00
resubmission_rules
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
webdav
Pluggable URI handling across upload components.
2020-07-14 10:09:50 -04:00
__init__.py
…
chained_dyndest_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
conftest.py
Performance metrics for tests.
2021-02-12 20:44:05 -05:00
delay_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
dockerized_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
embedded_pulsar_docker_job_conf.yml
Allow remote container port monitoring for ITs.
2020-02-19 09:53:10 -05:00
embedded_pulsar_job_conf.xml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
embedded_pulsar_metadata_extended_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
embedded_pulsar_metadata_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
embedded_pulsar_singularity_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
file_sources_conf.yml
Pluggable URI handling across upload components.
2020-07-14 10:09:50 -04:00
handler_template_job_conf.xml
Integration tests for handler assignment methods
2019-01-04 16:46:29 -05:00
io_injection_job_conf.yml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
refgenie.yml
add more tests
2021-03-25 14:01:17 +01:00
resubmission_default_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_dynamic_job_conf.xml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_job_resource_parameters_conf.xml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_pulsar_job_conf.xml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_runners.py
mypy for test/
2020-12-25 17:38:51 -05:00
resubmission_small_memory_job_conf.xml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_small_memory_resubmission_to_large_job_conf.xml
…
resubmission_tool_detected_always_error_job_conf.xml
Fix resubmission on tool error detection.
2018-11-23 14:32:04 +01:00
resubmission_tool_detected_resubmit_job_conf.xml
Fix resubmission on tool error detection.
2018-11-23 14:32:04 +01:00
sets_tmp_dir_expression_job_conf.xml
Fix another integration test
2021-02-25 13:49:58 +01:00
sets_tmp_dir_to_true_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
simple_job_conf.xml
Fix failing integration test.
2019-05-03 08:38:33 -04:00
singularity_job_conf.xml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
test_chained_dynamic_destinations.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_change_datatype_with_store_by_id.py
Move test_assign_column_pja to own class
2020-08-11 14:53:53 +02:00
test_cli_runners.py
Rev mypy.
2021-04-23 14:49:53 -04:00
test_config_defaults.py
Update tests for config option rename
2021-08-13 14:55:23 -04:00
test_config_options_users.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_config_schema.py
Move schema loading/validating code out of config
2020-03-02 15:55:29 -05:00
test_configuration_decode.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_containerized_jobs.py
Support setting container resolvers directly in the app config
2021-08-13 15:23:30 -04:00
test_data_manager_refgenie.py
lint
2021-03-25 14:08:14 +01:00
test_data_manager.py
add more tests
2021-03-25 14:01:17 +01:00
test_datatype_upload.py
Rev mypy.
2021-04-23 14:49:53 -04:00
test_default_permissions.py
Test cases and fix for config option new_user_dataset_access_role_default_private.
2020-12-01 09:05:57 -05:00
test_extended_metadata_mapping.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_extended_metadata_outputs_to_working_directory.py
Run extended_metadata integration tests with outputs_to_working_directory as well
2019-11-14 12:20:48 +01:00
test_extended_metadata.py
Load tool_version attribtue in extended metadata mode
2021-07-11 18:38:44 +02:00
test_fail_job_tool_unavailable.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_fluent_metrics.py
Replace API test with integration test
2021-03-10 12:54:41 +01:00
test_flush_per_n_datasets.py
Add test for paired discovery and fix paired discovery
2021-03-23 10:29:34 +01:00
test_genomes.py
Add tests for sequences and indexes endpoints
2021-02-10 15:55:21 -05:00
test_handler_assignment_methods.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_history_import_export.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_interactivetools_api.py
Use f-strings in forward-merged code
2021-05-11 18:09:53 +02:00
test_job_environments.py
Fix isolated job home dir on pulsar
2021-05-21 21:01:58 +02:00
test_job_outputs_to_working_directory.py
Update test class docstring
2021-01-07 17:53:29 +01:00
test_job_recovery.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_job_resubmission.py
fix mutable arguments in tests
2021-01-02 18:48:31 +00:00
test_kubernetes_runner.py
Rev mypy.
2021-04-23 14:49:53 -04:00
test_kubernetes_staging.py
Run kubernetes staging test against uvicorn
2021-04-13 10:13:42 +02:00
test_local_job_cancellation.py
Fix remaining issues reported by bugbear; add it to flake8 reqs
2021-01-16 05:58:15 +00:00
test_mules_as_job_handlers.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_page_revision_json_encoding.py
Fix pages integration test
2021-02-11 16:01:34 +01:00
test_pulsar_embedded_containers.py
try something else
2021-03-31 13:42:17 +02:00
test_pulsar_embedded_copy_working.py
test a tool with from_working_dir and pulsar
2019-12-13 22:58:32 +01:00
test_pulsar_embedded_extended_metadata.py
Better extended metadata configuration for Pulsar (don't copy outputs)
2021-04-15 15:01:28 -04:00
test_pulsar_embedded_mq.py
Add generic GALAXY_WEB_PORT variable to infrastructure_url parsing
2021-04-13 10:13:42 +02:00
test_pulsar_embedded_remote_metadata.py
Separate tests for "remote" and "remote + extended" metadata.
2021-04-14 13:21:15 -04:00
test_pulsar_embedded.py
Implement galaxy.json dynamic file collection in Pulsar.
2021-07-18 09:30:24 +02:00
test_quota.py
API test case for quota.
2020-10-20 11:12:18 -04:00
test_remote_files_histories.py
Allow history export to galaxy.files plugins.
2020-12-26 08:36:48 -05:00
test_remote_files_posix.py
Move shared test setup to lib/galaxy_test/driver/integration_setup.py
2021-05-03 16:18:21 +02:00
test_remote_files.py
Tweak test for clarity
2021-05-27 19:11:52 +02:00
test_repository_operations.py
Merge branch 'release_21.01' into release_21.05
2021-07-30 16:34:18 +02:00
test_resolvers.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_save_job_id_on_datasets.py
Revise test
2021-03-30 19:07:41 +02:00
test_scripts.py
Cleanout communication server.
2020-10-22 09:58:34 -04:00
test_shed_tool_tests.py
Need to call configure_shed for persistent shed_tool_conf
2020-05-31 19:25:42 +02:00
test_tool_data_delete.py
Replace content-type hack in tests with the json=True parameter
2021-06-18 17:43:39 +02:00
test_upload_configuration_options.py
Fix all E203, E741 and W504 flake8 errors
2021-01-18 10:35:41 +00:00
test_web_framework_config.py
FastAPI/ASGI CORS handling.
2021-01-27 19:55:48 -05:00
test_webdav.py
More comments for rapid testing optional galaxy.files stuff.
2020-10-22 09:30:50 -04:00
test_work_queue_put_failure.py
Replace usage of mkstemp with NamedTemporaryFile
2020-12-07 22:31:53 +01:00
test_workflow_handler_configuration.py
Don't start workflow scheduler for handler in job pool
2021-06-15 18:23:49 +02:00
test_workflow_refactoring.py
Merge remote-tracking branch 'upstream/release_21.01' into dev
2021-03-01 16:52:02 -05:00
test_workflow_scheduling_options.py
Merge branch 'release_20.09' into release_21.01
2021-03-02 19:14:58 +01:00
test_workflow_sync.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
tool_sheds_conf.xml
py3: fix installing and running data managers
2018-08-14 14:56:06 +02:00
uses_shed.py
Fix repo test setUp / tearDown
2021-07-30 15:50:13 +02:00
workflow_handler_configuration_job_conf.xml
…