galaxy

api

Fixes for flake8-import-order 0.11

2016-11-11 15:09:34 +00:00

auth

Clean up pam auth helper.

2015-07-17 08:06:04 -04:00

cleanup_datasets

Python3: small fixes to previous commits

2016-06-26 02:43:57 -04:00

communication

Adding maximize/minimize feature to the communication channel

2016-07-14 14:11:44 +02:00

data_libraries

Python3: small fixes to previous commits

2016-06-26 02:43:57 -04:00

loc_files

Fix the remaining 1334 flake8 errors in scripts/ . Close #391 .

2016-02-18 15:45:15 +00:00

metagenomics

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

microbes

Fix more E203 flake8 errors

2016-05-17 23:53:16 +01:00

migrate_tools

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

others

Python 3: use "as" instead of comma in except clause

2016-05-17 23:53:16 +01:00

slideshow

Add Galaxy Architecture slides in .md

2016-10-17 14:02:06 -04:00

taxonomy

Tweaks to taxonomy tools

2010-11-15 15:04:59 -05:00

tool_shed

Merge branch 'release_16.07' into dev

2016-09-23 17:59:52 +01:00

tools

Python 3: use "as" instead of comma in except clause

2016-05-17 23:53:16 +01:00

__init__.py

Adding db_shell.py that can be used to simplify writing command line

2012-03-05 12:11:53 -06:00

binary_compatibility.py

Add the scientific platform (Scientific Linux) as binary compatible

2016-02-03 13:33:42 -05:00

bootstrap_history.py

Fix a bunch of errors reported by Sphinx

2016-10-24 19:42:19 +01:00

build_toolbox.py

Python3: scripts/cleanup_datasets scripts/data_libraries

2016-06-25 21:49:25 -04:00

build_universe_config.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

check_eggs.py

Add stub fetch_eggs.py/check_eggs.py for people whose build/test/run

2015-11-06 11:06:11 -05:00

check_galaxy.py

Python3: scripts/cleanup_datasets scripts/data_libraries

2016-06-25 21:49:25 -04:00

check_python.py

Python3: scripts/cleanup_datasets scripts/data_libraries

2016-06-25 21:49:25 -04:00

common_startup.sh

Improve startup scripts

2016-08-11 15:28:28 +01:00

create_db.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

db_shell.py

Change remaining __all__ from list to tuple

2016-10-18 19:24:31 +01:00

drmaa_external_killer.py

Python 3: use "as" instead of comma in except clause

2016-05-17 23:53:16 +01:00

drmaa_external_runner.py

Python3: scripts/cleanup_datasets scripts/data_libraries

2016-06-25 21:49:25 -04:00

edam_mapping.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

external_chown_script.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

extract_dataset_part.py

Python 3: use "as" instead of comma in except clause

2016-05-17 23:53:16 +01:00

extract_toolbox_sections.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

fetch_eggs.py

Python3: scripts/cleanup_datasets scripts/data_libraries

2016-06-25 21:49:25 -04:00

functional_tests.py

Implement IntegrationTestCase and EmbeddedPulsarTestCase.

2016-04-04 20:08:55 -04:00

galaxy-main

Fix a bunch of errors reported by Sphinx

2016-10-24 19:42:19 +01:00

get_platforms.py

Fix the remaining 1334 flake8 errors in scripts/ . Close #391 .

2016-02-18 15:45:15 +00:00

grt.py

Refactor grt.py method names to be clear public interface is only main().

2016-07-21 14:59:29 -04:00

grt.yml.sample

grt.ini.sample is a YAML file, git it a YAML extension.

2016-07-21 14:31:25 -04:00

helper.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

manage_db.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

manage_tools.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

nosetests.py

Fix unit tests exit status

2016-07-29 19:47:08 +01:00

paster.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

patch.sh

Add the script I used to create security patches

2016-02-24 16:54:30 -05:00

rst2html.py

Cleaning up modules. Still a few stragglers that can't be easily eggified.

2006-11-15 18:27:21 +00:00

run_selenium_tests.sh

Adding workflow tests using Selenium. These actually drive the web browser to test the Javascript UI effectively. Currently can't run under buildbot.

2009-03-27 18:55:00 -04:00

runtime_stats.py

Fix more E203 flake8 errors

2016-05-17 23:53:16 +01:00

set_dataset_sizes.py

Initialize objectstore for fix_set_dataset_sizes script (otherwise it doesn't currently run successfully)

2016-06-25 19:04:44 -04:00

set_user_disk_usage.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

summarize_timings.py

Improvements to workflow scaling performance testing scripts.

2016-03-21 01:39:45 +00:00

sync_reports_config.py

Changed reports_wsgi.ini to reports.ini

2015-11-27 23:50:46 +05:30

transfer.py

Python 3: use "as" instead of comma in except clause

2016-05-17 23:53:16 +01:00

update_shed_config_path.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

validate_tools.sh

Refactor most of tool validation for CI into a standalone script.

2016-09-16 15:07:42 -04:00