Nicola Soranzo 21b44bf348 Fix all E201 and E202 style errors ...

using the following command:
```
autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E201,E202 .
```

2017-08-17 11:35:39 +01:00

..

bwa_solid2fastq_modified.pl

Updated solid_to_fastq so that -1 qualities are converted to 1 before conversion to FASTQ.

2009-10-21 16:04:24 -04:00

fastq_conversions.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

fastq_conversions.xml

Updated BWA wrapper tool: replaced threads option to hard-coded value, changed output and test file output datatype to sam, changed test file names to standard, better cleanup of temp files, added dbkey parameter and exec_before_job method to set it. Also changed name of a FASTQ Conversions tool test file

2009-09-16 11:14:39 -04:00

fastq_gen_conv.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

fastq_gen_conv.xml

Lint some tools

2017-01-23 21:11:43 +00:00

solid2fastq.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

solid2fastq.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

solid_to_fastq.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

solid_to_fastq.xml

Updated solid_to_fastq so that -1 qualities are converted to 1 before conversion to FASTQ.

2009-10-21 16:04:24 -04:00