John Chilton ccb5f61845 Absolute pins on linting dependencies. ...

- Use completely pinned and hashed dependencies for more consistent, reproducible linting.
- Leverage the awesomeness of pipenv to automate updating these.
- These will always be locked now so builds don't break randomly on other people updating their software. When we finally have the bot up and running that forward merges fixes for Galaxy we can add another if statement that runs this check against dev once a day and opens a PR if needed.

2017-10-26 15:53:25 -04:00

..

api

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

auth

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

cleanup_datasets

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

communication

Fix import order and Python3 compatibility

2017-08-18 12:35:04 +01:00

data_libraries

Backport of hardening fixes to 17.09

2017-10-18 13:03:49 -04:00

grt

Backport of hardening fixes to 17.09

2017-10-18 13:03:49 -04:00

loc_files

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

metagenomics

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

microbes

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

migrate_tools

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

others

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

slideshow

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

taxonomy

Tweaks to taxonomy tools

2010-11-15 15:04:59 -05:00

tool_shed

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

tools

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

__init__.py

Adding db_shell.py that can be used to simplify writing command line

2012-03-05 12:11:53 -06:00

bootstrap_history.py

Absolute pins on linting dependencies.

2017-10-26 15:53:25 -04:00

build_toolbox.py

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

build_universe_config.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

check_eggs.py

Add stub fetch_eggs.py/check_eggs.py for people whose build/test/run

2015-11-06 11:06:11 -05:00

check_galaxy.py

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

check_python.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

common_startup_functions.sh

Small tweaks to fixup #2866.

2017-09-22 14:47:15 -04:00

common_startup.sh

Explicitly include PyPI as an --extra-index-url to pip so we can install

2017-09-21 16:33:40 -04:00

config_sample_to_kwalify.py

Scripts to manage configuration infrastructure.

2017-08-10 13:14:55 -04:00

create_db.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

db_shell.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

drmaa_external_killer.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

drmaa_external_runner.py

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

dump_tour.py

Fix import order for cron/, scripts/ and test/

2017-09-25 23:44:39 +01:00

edam_mapping.py

Backport of hardening fixes to 17.09

2017-10-18 13:03:49 -04:00

external_chown_script.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

extract_dataset_part.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

extract_toolbox_sections.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

fetch_eggs.py

Fix import order for cron/, scripts/ and test/

2017-09-25 23:44:39 +01:00

functional_tests.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

galaxy-main

Fix a bunch of errors reported by Sphinx

2016-10-24 19:42:19 +01:00

get_platforms.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

helper.py

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

manage_db.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

manage_tool_dependencies.py

Fix import order for cron/, scripts/ and test/

2017-09-25 23:44:39 +01:00

manage_tools.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

nosetests.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

paster.py

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

patch.sh

Add the script I used to create security patches

2016-02-24 16:54:30 -05:00

rst2html.py

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

runtime_stats.py

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

secret_decoder_ring.py

Fix import order and Python3 compatibility

2017-08-18 12:35:04 +01:00

set_dataset_sizes.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

set_user_disk_usage.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

summarize_timings.py

Fix import order for cron/, scripts/ and test/

2017-09-25 23:44:39 +01:00

sync_reports_config.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

transfer.py

Backport of hardening fixes to 17.09

2017-10-18 13:03:49 -04:00

update_shed_config_path.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

validate_tools.sh

Refactor most of tool validation for CI into a standalone script.

2016-09-16 15:07:42 -04:00