mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
42 lines
2.3 KiB
XML
42 lines
2.3 KiB
XML
<?xml version="1.0"?>
|
|
<!--
|
|
If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
|
|
the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
|
|
initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
|
|
|
|
TODO: Hack to get biomart to work - the 'add_to_URL' param can be eliminated when the Biomart team encodes URL prior to sending, meanwhile
|
|
everything including and beyond the first '&' is truncated from URL. They said they'll let us know when this is fixed at their end.
|
|
-->
|
|
<tool name="BioMart" id="biomart" tool_type="data_source" URL_method="get" version="1.0.1">
|
|
<description>Central server</description>
|
|
<command interpreter="python">data_source.py $output</command>
|
|
<inputs action="http://www.biomart.org/biomart/martview" check_values="false" method="get" target="_top">
|
|
<display>go to BioMart Central $GALAXY_URL</display>
|
|
<param name="GALAXY_URL" type="baseurl" value="/tool_runner/biomart" />
|
|
</inputs>
|
|
<request_param_translation>
|
|
<request_param galaxy_name="URL" remote_name="URL" missing="">
|
|
<add_to_url>
|
|
<param_from_source name="_export" missing="1" />
|
|
<param_from_source name="GALAXY_URL" missing="0" />
|
|
</add_to_url>
|
|
</request_param>
|
|
<request_param galaxy_name="data_type" remote_name="exportView_outputformat" missing="tabular" >
|
|
<data_type_translation>
|
|
<format galaxy_format="tabular" remote_format="TSV" />
|
|
</data_type_translation>
|
|
</request_param>
|
|
<request_param galaxy_name="dbkey" remote_name="dbkey" missing="?" />
|
|
<request_param galaxy_name="organism" remote_name="organism" missing="" />
|
|
<request_param galaxy_name="table" remote_name="table" missing="" />
|
|
<request_param galaxy_name="description" remote_name="description" missing="" />
|
|
<request_param galaxy_name="name" remote_name="name" missing="Biomart query" />
|
|
<request_param galaxy_name="info" remote_name="info" missing="" />
|
|
</request_param_translation>
|
|
<uihints minwidth="800"/>
|
|
<outputs>
|
|
<data name="output" format="tabular" />
|
|
</outputs>
|
|
<options sanitize="False" refresh="True"/>
|
|
</tool>
|