mvdbeek 278a033372 Add SraManifest datatype ...

This datatype auto-generates its column_names from the first line of the
dataset, since the user can choose which columns to include.

2020-06-22 17:03:26 +02:00

..

access_libraries.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

biomart_test.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

biomart.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

cbi_rice_mart.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

data_source.py

Fix data_source tools on python 3

2019-01-18 12:13:13 +01:00

ebi_sra.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

eupathdb.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

fetch.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

fly_modencode.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

flymine_test.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

flymine.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

genbank.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

genbank.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

gramene_mart.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

hapmapmart.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

hbvar_filter.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

hbvar.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

import.py

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

import.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

intermine.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

metabolicmine.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

microbial_import_code.py

Remove unused import

2018-01-17 16:26:56 +00:00

microbial_import.py

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

microbial_import.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

modmine.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

mousemine.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

ratmine.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

sra.xml

Add SraManifest datatype

2020-06-22 17:03:26 +02:00

ucsc_tablebrowser_archaea.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

ucsc_tablebrowser_test.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

ucsc_tablebrowser.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

upload.py

Improve logging around provided metadata indicated errors.

2019-10-24 13:34:07 -04:00

upload.xml

properly quote paths in upload script

2020-01-15 21:46:24 +01:00

worm_modencode.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

wormbase_test.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

wormbase.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

yeastmine.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

zebrafishmine.xml

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00