Anton Nekrutenko e2ca36ea59 More changes plus modification requested by Madelaine Gogol

2008-04-28 16:08:30 +00:00

..

annotation_profiler

Misc tool cleanup: eliminated all references to python2.3 / python2.4, imported galaxy eggs in several missed tools. Commented Pattern Matching tool section from tool_conf.xml.sample since tool is not functional. Added job runner info for short read tools in universe_wsgi.ini.sample.

2008-04-25 13:04:55 +00:00

data_source

Missed a couple tool imports of the eggs modules.

2008-04-14 21:08:45 +00:00

emboss

Added versions to EMBOSS tools, corrected tool ids in version 5 EMBOSS tools to be same as those in version 4, corrected a few functional tests for version 5 tools.

2008-01-24 20:37:12 +00:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Misc tool cleanup: eliminated all references to python2.3 / python2.4, imported galaxy eggs in several missed tools. Commented Pattern Matching tool section from tool_conf.xml.sample since tool is not functional. Added job runner info for short read tools in universe_wsgi.ini.sample.

2008-04-25 13:04:55 +00:00

extract

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

fasta_tools

Various fixes in fasta tools.

2008-04-25 14:49:40 +00:00

filters

More changes plus modification requested by Madelaine Gogol

2008-04-28 16:08:30 +00:00

hyphy

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

maf

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

metag_tools

More changes plus modification requested by Madelaine Gogol

2008-04-28 16:08:30 +00:00

new_operations

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

patmat

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

plotting

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

regVariation

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

stats

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

taxonomy

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

Fix for optional DataToolParameters and fix for GMAJ tool imports.

2008-04-16 18:33:26 +00:00