Anton Nekrutenko 04ed0933cf Updated output format for solid2fastq converter

2010-04-07 08:44:57 -04:00

..

pileup_interval.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

pileup_interval.xml

Added the Pileup-to-Interval tool to condense pileup format

2009-09-18 10:15:09 -04:00

pileup_parser.pl

Modifications to pileup_parser

2010-03-02 16:35:21 -05:00

pileup_parser.xml

Updated output format for solid2fastq converter

2010-04-07 08:44:57 -04:00

sam2interval.py

Have sam2interval provide a (partial) header so that strand is automatically set in metadata.

2010-02-05 11:53:06 -05:00

sam2interval.xml

Create NGS peak calling section. Add MACS peak caller. Move GeneTrack to new section. Increment sam2interval tool version.

2010-02-05 16:06:27 -05:00

sam_bitwise_flag_filter.py

More SR changes

2009-09-21 10:32:48 -04:00

sam_bitwise_flag_filter.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

sam_merge_code.py

Added samtools-based tools (sam_to_bam, sam_merge, sam_pileup) with their supporting files and modified Bam datatype so temp files are properly cleaned up

2009-08-28 15:59:16 -04:00

sam_merge.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

sam_merge.xml

Updated Bowtie test files to handle new version (0.12.3) of Bowtie (bowtie_color_wrapper will fail until new version installed). Updated samtools tools test files. Removed version references from Bowtie and BWA tools.

2010-02-24 07:11:43 -05:00

sam_pileup.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

sam_pileup.xml

Fixed dbkey's in sam_pileup and sam_to_bam tools in tests so they will pass

2010-02-25 23:20:19 -05:00

sam_to_bam.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

sam_to_bam.xml

Fixed dbkey's in sam_pileup and sam_to_bam tools in tests so they will pass

2010-02-25 23:20:19 -05:00