Greg Von Kuster 53a4390863 Fix for histogram tool when input dataset is empty.

2008-10-01 10:17:58 -04:00

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annotation_profiler

Add a change_format tag to output datasets in tools. This allows for dynamic switching of output datatype based upon input values.

2008-09-30 16:17:12 -04:00

data_destination

Integrate with intermine ( data source ) and epigraph ( data destination ). Receiving data from epigraph coming soon. Data is sent to epigraph using a combination of DATA_URL and REDIRECT_URL tool params. This tool creates jobs, but does not queue them for execution.

2008-09-22 10:36:34 -04:00

data_source

Modified the way biomart tool runs: output generation will be completed before exec_afer_process hook is called.

2008-09-30 15:30:57 -04:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

extract

Add a change_format tag to output datasets in tools. This allows for dynamic switching of output datatype based upon input values.

2008-09-30 16:17:12 -04:00

fasta_tools

Bug fix for Concatenate FASTA alignment by species tool.

2008-07-29 11:24:28 -04:00

filters

Add a change_format tag to output datasets in tools. This allows for dynamic switching of output datatype based upon input values.

2008-09-30 16:17:12 -04:00

hyphy

Revert 2715.

2008-06-04 13:02:15 +00:00

maf

Add a change_format tag to output datasets in tools. This allows for dynamic switching of output datatype based upon input values.

2008-09-30 16:17:12 -04:00

metag_tools

add error msg for shrimp_wrapper when memory error and zero hits.

2008-09-30 16:40:42 -04:00

new_operations

More fixes for twill 0.9, the annotation profiler tests do not yet pass, but all else should work now, more tests coming soon.

2008-09-05 16:36:51 -04:00

plotting

Fix for scatterplot.py: Handling an uncaught exception.

2008-09-08 14:36:37 -04:00

regVariation

Adding tools to fetch microsatellites and estimate their mutabilities.

2008-09-24 18:20:39 -04:00

sr_mapping

Add a change_format tag to output datasets in tools. This allows for dynamic switching of output datatype based upon input values.

2008-09-30 16:17:12 -04:00

stats

Fix for histogram tool when input dataset is empty.

2008-10-01 10:17:58 -04:00

taxonomy

typo

2008-07-07 15:17:32 +00:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

Update GMAJ tool interface.

2008-09-19 12:27:20 -04:00