galaxy

library

Fix library security functional tests.

2014-04-25 15:29:56 -04:00

users

Fix certain failing functional tests.

2014-04-16 16:13:11 -04:00

1.axt

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1.bam

Restore files that were deleted due to a tool migration, but are still used in test/functiona/test_get_data.py.

2013-11-13 10:46:38 -05:00

1.bed

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1.bed.spaces

Bug fix for handling 'spaces to tab' for non-binary composite datatype files.

2010-06-07 15:34:20 -04:00

1.bedgraph

Enable BedGraph to be used as input to wig-to-bigwig tool.

2013-01-24 17:06:51 -05:00

1.bigbed

Apply patch from Brad Chapman providing support for detecting, uploading and displaying UCSC bigWig and bigBed. Add new functional tests for uploading and detecting bigbed and bigwig formats, and correct and clean up the test_get_data.py functional test script.

2010-08-19 13:58:10 -04:00

1.bigwig

Apply patch from Brad Chapman providing support for detecting, uploading and displaying UCSC bigWig and bigBed. Add new functional tests for uploading and detecting bigbed and bigwig formats, and correct and clean up the test_get_data.py functional test script.

2010-08-19 13:58:10 -04:00

1.customtrack

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1.fasta

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1.fastq

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1.fastqsanger

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1.fastqsolexa

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1.interval

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1.lav

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1.pileup

Added new tabular/pileup join tool and associated test files. Also added pileup datatype.

2010-03-26 12:00:55 -04:00

1.RData

Add missing file from previous commit.

2015-09-23 15:10:06 +01:00

1.sam

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1.scf

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1.sff

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1.tabular

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1.txt

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1.wig

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2.bed

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2.fasta

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2.tabular

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2gen.fastq

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3.bam

More fixes to 3.bam to make it valid stripped out secondary HD header and duplicated sequences chr10-16

2016-02-02 13:54:24 -05:00

3.bed

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3.maf

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3unsorted.bam

Restore files that were deleted due to a tool migration, but are still used in test/functiona/test_get_data.py.

2013-11-13 10:46:38 -05:00

4.bed

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4.bed.bz2

Add test for bz2 file upload

2010-09-10 14:17:05 -04:00

4.bed.gz

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4.bed.zip

Removed binseq.zip test and replace it with a zip test.

2010-07-01 08:59:26 -04:00

5.bed

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5.gff

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5.gff3

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6.bed

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7.bed

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8.bed

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9.bed

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454Score.pdf

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454Score.png

Fix the qual_stats_boxplot and quality_score_distribution tests again, hopefully

2011-03-02 13:46:07 -05:00

a.tab

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a.txt

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asian_chars_1.txt

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bcf_index_metadata_test.bcf

Added test for bcf index creation.

2015-04-28 13:45:33 -04:00

bcf_index_metadata_test.txt

Added test for bcf index creation.

2015-04-28 13:45:33 -04:00

biom1_metadata_test.txt

Add test for failing handling of BIOM1 metadata.

2016-06-07 12:02:09 -04:00

cat_wrapper_out1.bed

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composite_output_expected_log

Improve composite output tool test.

2016-05-16 11:51:03 -04:00

filter1_in3.sam

Enable filter tool to operate correctly on files with a variable number of columns (such as SAM files). Tool prepares and processes only columns up to and including the right-most column (i.e. column with the largest index) in the filtering condition, and subsequent columns are ignored. New functional test added for this functionality as well.

2010-11-04 16:30:34 -04:00

filter1_in5.tab

Add parameter to filtering tool to optionally skip header lines. Add test for new parameter usage as well.

2013-01-29 10:37:16 -05:00

filter1_inbad.bed

[Peter Cock] Filtering tool: Only cast used columns. Fix valid lines and skipped info lines. [Kanwei] Add new testcases to test this behavior. Fixes #537 . Fixes #535

2011-05-27 10:47:17 +02:00

filter1_test1.bed

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filter1_test2.bed

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filter1_test3.sam

Enable filter tool to operate correctly on files with a variable number of columns (such as SAM files). Tool prepares and processes only columns up to and including the right-most column (i.e. column with the largest index) in the filtering condition, and subsequent columns are ignored. New functional test added for this functionality as well.

2010-11-04 16:30:34 -04:00

filter1_test4.bed

[Peter Cock] Filtering tool: Only cast used columns. Fix valid lines and skipped info lines. [Kanwei] Add new testcases to test this behavior. Fixes #537 . Fixes #535

2011-05-27 10:47:17 +02:00

filter1_test5.tab

Add parameter to filtering tool to optionally skip header lines. Add test for new parameter usage as well.

2013-01-29 10:37:16 -05:00

GRCm38mm10_chr5_34761740-34912521.fa

Moved API tests to live under test/ rather than test/functional/. Removed test for DNAse flanked genes. Added test for UCSC table browser.

2014-04-30 15:35:57 -04:00

html_file.txt

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input_taxonomy.biom1

Add test for failing handling of BIOM1 metadata.

2016-06-07 12:02:09 -04:00

neostore.zip

reduced the size of the neostore zip file

2016-07-25 11:43:34 +02:00

phiX.fasta

Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.

2010-11-08 00:10:13 -05:00

qualscores.qual454

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qualscores.qualsolid

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rgenetics.bed

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rgenetics.bim

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rgenetics.fam

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rgenetics.map

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rgenetics.ped

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shrimp_cs_test1.csfasta

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simple_line_alternative.txt

Rework test framework testing and tools.

2014-04-28 11:48:51 -05:00

simple_line_x2.txt

Rework test framework testing and tools.

2014-04-28 11:48:51 -05:00

simple_line_x3.txt

Rework test framework testing and tools.

2014-04-28 11:48:51 -05:00

simple_line_x5.txt

Rework test framework testing and tools.

2014-04-28 11:48:51 -05:00

simple_line.txt

Rework test framework testing and tools.

2014-04-28 11:48:51 -05:00

simple_lines_both.txt

Add framework test tool that has both data and data_collection param - with test case.

2014-05-07 15:39:03 -05:00

simple_lines_interleaved.txt

Rework test framework testing and tools.

2014-04-28 11:48:51 -05:00

tinywga.bed

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tinywga.bim

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tinywga.fam

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tinywga.map

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tinywga.ped

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tinywga.ped.space_to_tab

Bug fix for handling 'spaces to tab' for non-binary composite datatype files.

2010-06-07 15:34:20 -04:00