Daniel Blankenberg c74f916ec0 Enhance Picard SamToFastq to allow read group aware processing.

2012-01-24 15:03:35 -05:00

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annotation_profiler

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data_destination

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data_source

A bit more actual user cleaning.

2012-01-18 14:34:00 -05:00

discreteWavelet

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emboss_5

Update EMBOSS tools to use quotes to escape user specified parameters during commandline substitution. Resolves #610.

2011-12-08 10:44:42 -05:00

encode

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evolution

python version of "phyloP interspecies conservation scores" tool

2011-11-30 12:05:59 -05:00

extract

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fasta_tools

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fastq

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fastx_toolkit

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filters

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gatk

Update GATK to version 1.4.

2012-01-23 18:03:15 -05:00

genetrack

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genome_diversity

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human_genome_variation

"Convert CG MasterVar file to pgSnp format" tool and test data

2011-11-28 13:15:08 -05:00

hyphy

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indels

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maf

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meme

Have fimo.xml use fields.path approach instead of directly filtering on data table.

2011-11-22 12:21:05 -05:00

metag_tools

Replace old filter() on tool_data_tables by param value hack with param.fields.path for several tools.

2011-11-29 17:30:14 -05:00

multivariate_stats

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mutation

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ncbi_blast_plus

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new_operations

Have GOPs Concatenate tool always respect the provided strand column.

2012-01-18 10:30:08 -05:00

next_gen_conversion

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ngs_rna

Better error reporting in Cufflinks.

2012-01-23 17:40:36 -05:00

ngs_simulation

Replace old filter() on tool_data_tables by param value hack with param.fields.path for several tools.

2011-11-29 17:30:14 -05:00

peak_calling

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picard

Enhance Picard SamToFastq to allow read group aware processing.

2012-01-24 15:03:35 -05:00

plotting

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regVariation

Update Yogeshwar Kelkar's microsatellite tools.

2011-11-28 13:37:10 -05:00

rgenetics

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samtools

Removed uneccessary hide_stderr.py script from samtools

2011-12-22 11:16:28 -05:00

solid_tools

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sr_assembly

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sr_mapping

Minor fix for 04e8ed0cd930.

2011-11-29 17:35:14 -05:00

stats

Add Maximal Information-based Nonparametric Exploration (MINE) tool.

2011-12-16 12:54:21 -05:00

taxonomy

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validation

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vcf_tools

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visualization

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