mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
517 lines
103 KiB
Plaintext
517 lines
103 KiB
Plaintext
##maf version=1
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a score=60426.000000
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s hg17.chr7 127471195 331 + 158628139 gtttgccatcttttgctgctctagggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATCATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTAAAACTTCCC-------------------------------AAATACT-GCCACTGATGTCCTG-----ATGGAGGTA-------TGAA-------------------AACATCCACTAA
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s panTro1.chr6 129885076 331 + 161576975 gtttgccatcttttgctgctcttgggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATCATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTGAAACTTCCC-------------------------------AAATACT-GCCACTGATGTCCTG-----ATGGAGGTA-------TGAA-------------------AACATCCACTAA
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s mm5.chr6 28904571 357 + 149721531 CTCCACTCTCGTTTGCTGTT----------------CTGTCACCATGGAAACAAA-CGAGGGTGGTCCAGTTACTATCTTGACTGCAGCTGGCAGTCAGTT-GCCACT-----CAGGAATAAGGCTATGCCATT-GATCCACTGAACCGTGATCTGGAAACCTGGCTGTTGTTT-------CAAGCCTTGGGGCCAGTTTGCGGTGTTACTCATGA--CTCTAAGATCGTGTGCTTG----CTGCAGGAAGAGACAGCAAGGGGGTTACATTTAAAAAGCCCCCAGTTTAGCTATAGGCAGGCCAACAGGTGTAAAAATACTCACTAGTAATGGGCTGAACTCATGGAGGTAGCATTAGTGAGACACTGTAACTGTTTTTTTAAAAATCACTAA
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s rn3.chr4 56178191 282 + 187371129 CTTCACTCTCATTTGCTGTT----------------CTGTCACTATGGAGACAAACACAGGCTAGCCCAGTTACTATCTTGATCACAGCAGCT-GTCAGCTAGCTGCCACTCACAGGAATAAGGCCATACCATT-GATCCACTGAACCTTGATCTAGGAATTTGGC----------------------TGGGGCCAGTTTGCGGTGTCACTCATGA--CTCTAAGATTGTGTGTTTG----CTCCAGGAAGAGACGGCAAGAGGATTACCTTTAAAAGGTTC---------------------------------GGAGTCTAGCTGTAGACAGCCCA-----ATG--GGTA-------TAAC-------------------AATACTCACTAA
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a score=8157.000000
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s hg17.chr7 127471526 58 + 158628139 AATTTGTGGTTTATTCATTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG
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s panTro1.chr6 129885407 58 + 161576975 AATTTGTGGTTTATTCGTTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG
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s mm5.chr6 28904928 54 + 149721531 AA----CGTTTCATTGATTGCTCATCATTTAAAAAAAGAAATTCCTCAGTGGAAGAGG
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a score=43613.000000
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s hg17.chr7 127471584 104 + 158628139 GAGATATTTGGggaaatt---ttgtatagactagctttcacgatgttagggaattattattgtgtgataatggtcttgcagttaca-cagaaattcttccttattttt
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s panTro1.chr6 129885465 104 + 161576975 GAGACATTTGGggaaatt---ttgtatagactagctttcacgatgttagggagttattattgtgtgataatggtcttgcagttaca-cagaaattcttccttattttt
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s mm5.chr6 28909125 102 + 149721531 GAGACATTTGGGGGAAATACGATGTATA------CTTTCATGATCTTAAAGAATTGCTATTGTTTGATAGTGATATTATGGTTAAATTAAAAAAAAACCCTTACTTTT
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s rn3.chr4 56182196 99 + 187371129 GAGATATTTGGGGGAAATATGATGTGCA------CTTCCATGATCTTAAAGAATTGCTACTGTTTGATAGTGATCTTATGGTTAAA-TAAAAAAAAT--CTTAGTTGT
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s canFam1.chr14 52864846 108 - 63549963 GAGATATTTGGGGGAATTTGAATGTAGTGTTGCTCTTTTGTGATGCTAAGAAATTATAATTGTCTGATGATAGTCTCGTGGTTATGGGGGAAATGCTTCCTTATTTTT
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a score=63217.000000
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s hg17.chr7 127471688 183 + 158628139 tgggaa---gcaccaaag----tagggat---aaaatgtcatgatgtgtgcaatacactttaaaatgtttttg-----ccaaaataatt----------------aatgaagc--aaatatggaaa-ataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaatttttcatttaaaaa
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s panTro1.chr6 129885569 183 + 161576975 tgggaa---acaccaaag----tagggat---aaaatgtcatgatgtgtgcaatacgctttaaaatatttttg-----ccaaaataatt----------------aatgaagc--aaatatggaaa-ataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaaattttcatttaaaaa
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s mm5.chr6 28909227 176 + 149721531 CATAAA---ATACTCAAATATTTAGGGGTATGACAATGTCATAGTGTCTGCAATTTGCTTTAAAATAATTTTG-------AAAAC---------------------CTGAGGCTAAACTATGGGAA-ATAGCAATTATTACATATGGGTAATAAGTA-----TAACTCACTATATTATTTTTCACTAT----TGTGTTTGAAATTTTCATTTTAAAA
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s rn3.chr4 56182295 194 + 187371129 TAGAAA---ATACTCAAATATTTAGGGGCGTGACAATGTCACAGTGTCTGCAATTTGCTTTAAAG-ATTTTTAAATATTTAAAAAAGTTTTAATAATTTTGAAAAACTGAAGCTACACTATGGGAA-GTGGTAATTGTTACATATGGGTAATAAGTA-----TAATTCGTTATATTATT-------------TTTCTTAGAATTTTTCATTTGAAAA
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s canFam1.chr14 52865149 163 - 63549963 tagagacacaaactgaagtatttaaggat---gaaatgtcatgatgtttgcaattggctttaaaatattttag-----ccaaaa-agta----------------aatgaagc--aaatatgggaagacaataatcattaaatctaggtgaTGCATA---------------------------CTTTTCCATATGTTTGAAATTTTCATTTAAAAA
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a score=273.000000
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s hg17.chr7 127471871 1 + 158628139 a
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s panTro1.chr6 129885752 1 + 161576975 a
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s mm5.chr6 28909403 1 + 149721531 A
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a score=91.000000
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s hg17.chr7 127471871 1 + 158628139 a
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s canFam1.chr14 52865537 1 - 63549963 A
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a score=273.000000
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s hg17.chr7 127471871 1 + 158628139 a
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s panTro1.chr6 129885752 1 + 161576975 a
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s mm5.chr6 28909403 1 + 149721531 A
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a score=91.000000
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s hg17.chr7 127471871 1 + 158628139 a
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s canFam1.chr14 52865537 1 - 63549963 A
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a score=8913.000000
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s hg17.chr7 127471872 40 + 158628139 ctttgagc-----tagacaccaggctatgagctaggagcatagca
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s panTro1.chr6 129885753 40 + 161576975 ctttgagc-----tagacaccaggctatgagctaggagcatagca
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s mm5.chr6 28910662 44 + 149721531 CTTTGTGCTTAGGTAGGCACTGAGCTCTTAAATTGGA-TACAGCG
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s canFam1.chr14 52865538 40 - 63549963 CATCAtgc-----tagatcctggactatgagctgggtatatagca
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a score=91878.000000
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s hg17.chr7 127471912 335 + 158628139 atgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa--------------------------------------------------ctc-aaagaatgcacattctCTGGGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACCTG-TGTGATCCTGGCTTTTCCTGTTCCCTCCG---CATCATCACTGCAGGTGTGTTTTCCCAAGTTTTAAACATTTA------CCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaattttccctg-ggcacccatgtgttcttggcactggaaaagtaccggga
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s panTro1.chr6 129885793 335 + 161576975 atgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa--------------------------------------------------ctc-aaagaatgcacattctCTGGGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACATG-TGTGATCCTGGCTTTTCCTGTTCCCTCTG---CATCATCACTGCAGGTGTATTTTCCCAAGTTTTAAACATTTA------CCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttttcctg-ggcacccatgtgttcttggcactggaaaagtaccggga
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s mm5.chr6 28910706 350 + 149721531 ATGAGCAA----------------------------------------------------------------------------------------------AAAAACAACAACAAAAAACAAACAAACAAAAAAACCAAAAACCAAAAACCAAAAAAACCTATAGCCTC-ACAGGGTGGGTTGTCTTTGAGGAACATGCATCCGCTAGAAAGTCCCAAGTACACTATGACAGTTG--CCCAGGCCCCGCCTTAAACCTGGTTTTCCTGGTTTCTTTCA---CATCATTACCACGAATATATTTCCTCAAGTTTAAAGAAAGTACCCCCTCCTTTCCAGT-GCCTCAAATCTAGAAGAATATTCATAGTGAAGT-GCA------------------------CAGCCGGGTGGTGCATGGTAAT-CTGGAAGTCACCTCTGCAAATCTTTCCTG----------------TTGGTGCTGTGAAGGCACCAGGA
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s rn3.chr4 56183448 420 + 187371129 ATGACCAATATACACTGTTTACATGTATAGCATTGTGAATGGAGACATAAAAAGATAATCTAGCTTTGTGCTAGGTAGGTGCTGAGCTCTTAACAGTGCTGGGCAGAAACCTATAAC--------------------------------------------------CTC-ACAGGGTGGGTTGTCTTTGAGGAGCGTGCTAACCCTAGGAAGTCTCAAATACAATGTGATGGTTGCCCCCAGGCACCACCTTGAACCTGGTCTTCCTGGTTTCTTTCA---CACCATTACCACAAATACATTTTCTCAGGTTTAAAAGAAGTC-CCACTCCTTTCCAGT-GCCCTAGATCTAGAAGCACATTCATAATGATGT-ACACTAACCCGA---------------CAGCTGTGTGGTATATGGTATC-CCGGAAGTCACCTCAGCAAACCTTTCCCGGGGAACCTACATGGTGTTGGTGCTGTGAAGGTACCAGGT
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s canFam1.chr14 52865578 336 - 63549963 gtgaacaa---------------------------------------------------------------------------------------------aacagagccctgcagt--------------------------------------------------cttgatggagcacacaACCTTTGGGGAACATGTTTCCATAAGAAAGTCTCCAATGTGATCTGATGGT-GCCGCCAGGACCTA-TGTCAGCCTACCGTTCCATGTCCCCTCCACACCATCATCACTGCAGGTGTGTTTTCCCACATTTTAAATATCTG-------CTTCCCGGTGGCCTTGAGTCTAGAGGAGTCCCCCCACTATGGTGGCACTAATACTGAAGGTCAGAAATAATCAGTTCTGTGGTGCATGTTGCCCCTGAGGTTCTGTTCGGGAAACTTCTTCTG-AGCAC----ATGCACCTGGCACTGCAAACGTACCAGGA
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a score=1416.000000
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s hg17.chr7 127472247 11 + 158628139 ctgaaacagtt
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s panTro1.chr6 129886128 11 + 161576975 ctgaaacagtt
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s mm5.chr6 28911056 11 + 149721531 CTTCAAGAGTA
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s rn3.chr4 56183868 11 + 187371129 TGTCAAGGGTA
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a score=82819.000000
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s hg17.chr7 127472258 423 + 158628139 gatggccca-atccctgtcctct---taaaacctaagggaggagaTGGAAAGGGG-CACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA---AGGATGGAGAGGCCCTAGTGGAAT-GGGGAGATTCTTCCGGGAGAAGCGATGGATGCACAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCAATGTG-------CAATGTATGTGTGTTCCCTGGTTcaagggctgg-gaactttctcta-aagggccaggtagaaaacattttaggctttctaagccaag--gcaaaat-tgaggatattacatgggtacttatacaacaagaataaacaatt---tacacaattttttgttgacagaattcaaaactttat----agacacagaaatgcaaatttcctgt
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s panTro1.chr6 129886139 423 + 161576975 gatggccca-atccctgtcctct---taaaacctaagggaggagaTGGAAAGGGG-CACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA---AGGATGGAGAGACCCTAGTGGAAT-GGGGAGATTCTTCCGGGAGAAGCGATGGATGCGCAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCAATGTG-------CAATGTATGTGTGTTCCCTGGTTcaagggctgg-gaactttctcta-aagggccaggtagaaaacattttaggctttctaagccaag--gcaaaat-tgaggatattacatgggtacttatacaacaagaataaacaatt---tacacaattttttgttgacagaattcaaaactttat----agacacagaaatgtaaatttcctgt
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s mm5.chr6 28911067 334 + 149721531 AATGGCAGAGGGCTCTGTTCTCT----------------------------------GTCCA---TAGACAAGGAAGC---------CTGCCAGTGG-----------------------TGGAGAGCAGGGCCTATGCAAAACAGGGGGGGTTCTGTGGGCAGAAGGGATGGACCTGACTCCAGGAACGCCCATA-AGAGACGGGCAGGACTGGGAGCCAGGAGCAGCCAGCGCA--------GGTGTGTGTAGGTTTCATAGTTT---------------------------GCAGGTTAGCAAACAATTCTCGCTTGGCAGGCCAAGA-GGGAAAT-AAAGGTTACCCCGTGGGTACTTAT---ACAAGAGAAAACAAG-------ACAATTTTTGGTTGACCAAATTCAGAACTTTATTTGAGGATGCTAAAGTTTTAATTTCTTAA
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s rn3.chr4 56183879 340 + 187371129 AATGGCAGAGGCCCCTGTTCTCT----------------------------------GTCCA---TAGTCAAAGAAGC---------CTCTCAG----------------------A---TGGAGAGCAGGGCCTATGCAAAAG-AGGGGGCTTCTGTAGGCAGAAGGGATGGACTAGCCTCCGGACATAGCCATAGAGAGGCTGGCAGGACTGAGACCCAGGAGAAGCCAGCGCAGGTGTGCGGGCGTGTGTATATTTCATAGTTT---------------------------GCAGGTTGGCAAACAATTCCTGCTTTGCAGGCCAAGA-GGAAACT-GAAGGTGACCCCGTGAGTGCTTAC---ACAAGAGAAAACAAG-------ACAATTTTTGGTTGACCAAATTCAGAACTTTATTTGAGGATGCTAAAGTTTAAATTTCTTTT
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s canFam1.chr14 52866108 405 - 63549963 GGAGACTTG-ATGCCTGCCTTCCACTTACAGCCTGTGGGCAGAGGTGGGAAGAGGTCACGCAAGCCAGTTGGAATGAGGGGAGTTGGCTGGAAAGGTGACCAGGACAAGCTACTTCAACCAGGAAGAAGAGACCCC---------GG--------TGCTTGGAGAAGGCCTGATTGAGCAGTCCTGCATGCCCGCCCAC-GACTGGCAGGAATAAAGACCCAGAAGAGCTAACGTG-------CAATGTA------TTTTCTAGTTCCAgggttggcaaactttctctctaagggtgggatgataaacattttaggcttttcagaccaagaggcgacatcagagggtat---gtaggt---------acaagagggaaaagttgcccccggaattttttg--gataaaattcaaaactttacttagggatgccaaaatgtaaacttcatat
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a score=9567.000000
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s hg17.chr7 127472681 34 + 158628139 aattttcccat-gagaactattcttct--tttgtttt
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s panTro1.chr6 129886562 34 + 161576975 aattttcccgt-gagaactattcttct--tttgtttt
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s mm5.chr6 28911401 36 + 149721531 ACTTCTCATGT-CAGAACTATTGTTCTTGTTTGTTTC
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s canFam1.chr14 52866513 35 - 63549963 aatggtcatgtccataactattcttct--tttatttt
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a score=-583.000000
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s hg17.chr7 127472715 10 + 158628139 gttttgcgac
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s panTro1.chr6 129886596 5 + 161576975 C-----CGAC
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s mm5.chr6 28911437 5 + 149721531 C-----CAGC
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a score=99993.000000
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s hg17.chr7 127472725 1084 + 158628139 AGGGTTGCGCtgatcctcccgcctcagtctccctaagtgctgagatgttgcaggaagtcagggaccccgaacagagagatcggctggagccgtggcagaggaacataaattttgaagatttcattttaatatggacacttatcagttcccaaataatacttttataattttttatgcctgtctttgctttaatctcttaatcctgttatcttcataagctaaggatgtacgtcacctcaggaccactgtgataattgtgttaactgtacagattgattgcaaaacatgtgtgtttgaacaatatgaaatcagtgcaccttgaaaaagagcagaataacagcaatttttagggaacaagggaagacaactataaggtctgactgcctgcggggtcgggcaaagggagccatatttttcttcttgcagagagcctataaatagacctgcaagtaggagagatattgctaatttcttttgctagcatggaatattaatattaacaccctgggaaaggaatgcattcctggggggaggtctataaatggccgctctgggaatgtctatcctacgcaatggagataaggactgagatacgccctggtctcctgcagtaccctcaggcttactagggtggtgaaaaactccgccctggtaaatttgtggtcagaccagttttctgctctcgaacactgttttctgttgtttaagatgtttatcaagacaatacgtgcaccgctgaacacagacccttatcagtagttctcctttttgccctttgaagcatgtgatctactccctgttttacaccccctcaccttttgaaacccttaataaaaaacttgctggttt-gaggctcaggtgggcatcacagtactaccgatatgtgatgtcacccccggcggcccagctgtaaaattcctctctttgtactctctctctttatttctcagccagctgacacttatggaaaatagaaagaacctacgttgaaatattgggggcaggttcccccaataTCTGGTGCCCAACGTGGGAtactgagattacaagcatgagccactgcatctggcctcttcttttgatt
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s panTro1.chr6 129886601 1085 + 161576975 AGGGTTGCGCtgatcctcccgcctcagtctccctaagtgctgagatgttgcaggaagtcagggaccccgaacagagagatcggctggagccgtggcagaggaacataaattttgaagatttcattttaatatggacacttatcagttcccaaataatacttttataatttcttatgcctgtctttgctttaatctcttaatcctgttatcttcataagctgaggatgtacgtcacctcaggaccactgtgataattgtgttaactgtacaaattgattgcaaaacatgtgtgtttgaacaatatgaaatcagtgcgccttgaaaaagagcagaataacagcaatttttagggaacaagggaagacaactataaggtctgactgcctgtggggtcgggcaaaaagagccatatttttcttcttgcagagagcctataaatagacctgcaagtaggagagatatcgctaatttcttttgctagcaaggaatattaatattaacaccctgggaaaggaatgcattcctggggggaggtctataaatggccgctctgggaatgtctatcctatgcaatggagataaggactgagatacgccctggtctcctgcagtaccctcaggcttactagggtggtgaaaaactccgccctggtaaatttgtggtcagaccagttttctgctctcgaaccctgttttctgttgtttaagatgtttatcaagacaatacgtgcaccgctgaacatagacccttatcagtagttctcctttttgccctttgaagcatgtgatttactccctgttttacaccctctcaccttttgaaacccttaataaaaaacttgctggttttgaggctcaggtgggcatcacagtactaccgatatgtgatgtcacccccggcggcccagctgtaaaattcctctctttgtactctctctctttatttctcagccagctgacacttatggaaaatagaaagaacctacgttgaaatattgggggcaggttcccccaataTCTGGTGCCCAACGTGGGATACTGATTCTACAAGCATGAGCCACTGCATCTGGCCtcttcttttgatt
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a score=15522.000000
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s hg17.chr7 127473809 97 + 158628139 tttttttttcaaacttttacaaatgtagaaaccattcttagcttttgggcattaccaaacccggcagtgg-caggctcggttcaccaacgtcatttgc
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s panTro1.chr6 129887686 97 + 161576975 tttttttttcaaacttttacaaatgtagaaaccattcttagcttttgggcattaccaaacccggcagtgg-AAGGCTCGGTTCACCAACATCATTTGC
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s canFam1.chr14 52866548 97 - 63549963 tatatttttcaactctttaaaaatgcaaaaaccattcctagc-tcggggccatggtggtcctggtggtggtcggatttggctcacccacataacttgc
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a score=28088.000000
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s hg17.chr7 127473906 331 + 158628139 agttccccgCTTTATGTTATGGgttttgttttgttttgtttttttt-attgagacagagtttcactcttgttgcccaggctgtagtgcaatggtctgatcttggctcactgcaacctccacttcccaggttcaagccattctcctgcctcagcctctcaagtagctgggattacagacactcaccaccacacctggctaattttgtatttttagtagagatgaggtttcaccatgttggccaggctggtctcgaaatcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcttgagctaccacgcctggct
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s panTro1.chr6 129887783 318 + 161576975 AGTTCCCCGCTTTATATTATGGGttttttttttttttttttttttttattgagacagagtttcactcttgttgcccaggctgtagtg--------------tggctcactgcaacctccacttcccaggttcaagccattctcctgcctcagcctctcaagtagctgggattacagacactcaccaccacacctggctaattttgtatttttagtagagatgaggtttcatcatgttggccaggctggtctcgaaatcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcttgagctaccacgcctggct
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a score=54055.000000
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s hg17.chr7 127474237 165 + 158628139 GGGTTGGTTCTCAATGGAGTGGTTTGTTTTTGGAGCTGCTCT-GCGCAGtggggaccagaataggcctg-------------------ggttcctagcccattgctattcctt----accagctgtggattctaaggaaagtcatttaacctcgctggaccttag-attcctcatccctgaaGCCCAAGG
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s panTro1.chr6 129888101 165 + 161576975 AGGTTGGTTCTCAATGGAGTGGTTTGTTTTTGGAGCTGCTCT-GCGCAGTGgggaccagaataggcctg-------------------ggttcctagcccattgctattcctt----accagctgtggattctaaggaaagtcatttaatctccctggaccttag-attcctcatcCCTGAAGCCCAAGG
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s mm5.chr6 28911560 185 + 149721531 TGGCTGGTTCTGAGGATGATGGTTTGTTTTCAAAGCTATTTT-CAGTTGGGGTGAACTCAATAGGCCTGATCCAGTTGTTTCACACCTGGATCCCTGGCTATCTCTAATCCTTAACAACTAGCTGAGG-TTTTAAGACAGAAAGCTGAACTGTTCTGTATCT--G-TTTCCTCCCATTAGGAACCCAATG
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s rn3.chr4 56184548 182 + 187371129 TGGTTGGTTCTGAGGGCGATGGTTTGTTTTCAAAACTGCTTT-CAGTTGGAGTGACCTCAATAGGCCTGATCCAGTTGTTCAACCT--GGCTCCCTGGCTTTCTCTAATCCTTAACAGCTAGCTGAGG-TTTTAAGACAGGAAGCCAAACTCTTCCGTATCT----TTTCCTCCCACTAGGAACCCAAAG
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s canFam1.chr14 52866843 157 - 63549963 GGGCTGGTGCTTA-----ACGGTTCGGTTTCAGGGCTGCTCTCCCCCTGTGGGGACGCGAACGG------------------------GGCTCCCTGcccatcgctactcctt----cccagctggtggttctggggaaagtcactgaacctccatggacttcagttttcCGCGTCCCTCAAGCCCGACG
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a score=1272.000000
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s hg17.chr7 127474402 3 + 158628139 GTa
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s panTro1.chr6 129888266 3 + 161576975 ATA
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s mm5.chr6 28911745 3 + 149721531 ATA
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s rn3.chr4 56184730 3 + 187371129 ATA
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a score=4888.000000
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s hg17.chr7 127474405 58 + 158628139 aaacaaaacaaaacaaaacaaaacaaaccaaCCCATCATGTAAAGCGGGGAACTACAA
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s panTro1.chr6 129888269 48 + 161576975 AAACAAAACAAAACAAA----------CCAACCCATCATGTAAAGTGGGGAACTACAA
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s mm5.chr6 28911757 44 + 149721531 TAATGAAAAAAAAAAAAAAAAAAAACAACAACC--------------GAAAACAACAA
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a score=3517.000000
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s hg17.chr7 127474463 134 + 158628139 ACGATACAGGTGAAACATGCCTACCACACCACTCACAGGCT--ATGATGACAAAAACGTGGCTACATCTGGGACCACCCCCCAACCCCCACTTTGTACGTAGGAAATACGGAGTTGAGGATGGAGACCCACAGTAT
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s panTro1.chr6 129888317 134 + 161576975 ACGATACAGGTGAACCATGCCTACCACCCCACTCACAGGCT--ATGATGACAAAAACGTGGCTACATCTGGGACCACCCCCCAACCCCCACTTTGTACGTAGGAAATACGGAGTTGAGGATGGAGACCCACAGTAT
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s mm5.chr6 28911801 65 + 149721531 CAACAACAAACCAAAC-------------------------------------AAACATTGTTTGATCAGGGACAGGCCCTTGCCACCTGCCC--------------------CTGGGACTG--------------
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s canFam1.chr14 52867000 99 - 63549963 -----AAGGCTCAGGC----------TCCTACTCCCAGGCCGGGTGAGG----AAATGCGGCTGCGT---GCACCGTCCTGC------------GTACGCGGGAAACCCGGGGTAGAGGAGG---ACTCGCGGGGC
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a score=301244.000000
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s hg17.chr7 127474597 1356 + 158628139 GTCCAGAGTGTCCCCAAAGGCCACAGTGCCCGCCTGGAGCCCTCCAGAGAGCGTGCACTCCCTGGGGTGCCAGCCAGAGACAACTTGCCCTGAGGCTTGGAACTCGATTCTCCGCGTGCCAGAGAAGGGGTGGGACTTCAGAACCCCCAACCCCGCAATCTGGGTCGGGGAGCCTGGCGCACTGCGGGCCGCTCCCTCTAACCCTGGGCTTCCCTG------GCGTCCAGGGCCGTCGG-----------GGCCGAGTCCCGATTCGCTCCCACCCCGAAGCCGCGCCAGGACCAACGAGGGCGCAGCCGTATGCCCCAGCCCGCTCCGCGGAGCCCCTCACAGCCAcccccgccccgaccgcgccccgcgcggcTCGAAGCACCTTCCCAAGGGGCTGGTCCTTGC----------GCCATAGTCGCGCCGGAGCCTCTGGAGGGACATCAAGGATTTCTC-GCTCCTACCAGCCACCCCCAAATTTTTGGGAGGTACCCAAGGGTGCGCGCGTGGCTCCTGGCGCGCCGAGGCCCTCCCTCGAGGCCCCGCGAGGTGCACACTGC---------GGGCCCAGGGCTAGCAGCCGCCCGGCACGTCGCTACCCTGAGGGGCGGGGCGGGAGCTGGCGCTAGAAATGCGCCGGGGCCTGCGGGGCAGTTGCGCAAGTTGTGATCGGGCCGCTATAAGAGGGGCGGGCAGGCATGGAGCCCCGTAGGAATCGCAGCGCCAGCGGTTGCAAGGTAAGGCCC-CGGCGCGCTCCTTCCTCCTTCTCTGCTGGTCTTTCTTGGCAGGCCACAGGGCCCCACACAACTCTGGATCCCGGGGAAACTGAGTCAGG-AGGGATGCAGGGCGGATGGCTTAGTTCTGGACTATGATAGCTTTGTACCGAG-----TTCTAGCCAGATAGAAGGTTACCGGGAGCTGGGGAGCGTTGGATTTGCTGCTGGGCTGTGCCGGTGCCCAGAAGGCA------GGACCTTGCAGAACCAGCCAGGTCCCTGGGAGACTGTCAGACCCACCAACCTGGTGGCATTCGCAGAGCTGAGATGCATTGGAAATTGCCTTGGGCACATCCCCAAAGATCAGGATGTCCCACCCCAGTCTGAAGGAGA---TAAAGTTGGGGGTAGGAGAGACGCAG-ATGCAAGTGATCAGTCTC---AGTCCCAGACATTGCCTTGCTCTGCGGGTAGGAATTCAGGATTCATTTTCCAGGGAAG--------TTCCTGACCTCTGAATGAGAGGGGCTGTGTAAGGCCAATGCCTGGG-AGGAAGGCAAGGATGAGTAGAGGTGGGGGGAAACAAGTGTCAGGAAGA--------------------------------------------CTCAAA---------ATCTTC--------------------------------------------------------------CAGAGAAATTGT-----GCAGGGTCTTACCAGATCTGTCCTCAAAGCCATGCAAATTGCCTTCTTTGCAATGCA
|
|
s panTro1.chr6 129888451 1356 + 161576975 GTCCAGAGCATCCCCAAAGGCCACAGTGCCCGCCTGGAGCCCTCCAGAGAGCGCGCACTCCCTGGGGTGCCAGCCAGAGACAACTTGCCCTGAGGCTTGGAACTCGATTCTCCGCGTGCCAGAGAAGGGGTGGGACTGCAGAACCCCCAACCCCGCAATCTGGGTCGGGGAGCCTGGCGCACTGCGGGCCGCTCCCTCTAACCCTGGGCTTCCCTG------GCGTCCAGGGCCGTCGG-----------GGCCGAGTCCCGATTCGCTCCCACCCCGAAGCCGCGCCAGGGCCAAGGAGGGCGCAGCCGTATGCCCCAGCCTGCTCCGCGGAGCCCCTCACAGCCAcccccgccccgaccgcgccccgcgcggcTCGAAGCACCTTCCCGAGGGGCTGGTCCTTGC----------GCCATAGTCGGGCCGGAGCCTCTGGAGGGACATCAAGGATTTCTC-GCTCCTACCAGCCACCCCCAAATTTTTGGGAGGTACCCAAGGGTGCGCGCGTGGCTCCTGGCGCGCCGAGGCCCTCCCTCGAGGCCCCGCGAGGTGCACACTGC---------GGGCCCAGGGCTAGCAGCCGCCCGGCACGTCGCTACCCTGAGGGGCGGGGCGGGAGCTGGCGCTAGAAATGCGCCGGGGCCTGCGGGGCAGTTGCGCAAGTTGTGATCGGGCCGCTATAAGAGGGGCGGGCAGGCATGGAGCCCCGTAGGAATCGCAGCGCCAGCGGTTGCAAGGTAAGGCCC-CGGCGCGCTCCTTCCTCCTTCTCTGCTGGTCTTTCTTGGCAGGCCACAGGGCCCCACACAACTCTGGATCCCGGGGAAACTGAGTCAGG-AGGGAGGCAGGGCGGATGGCTTAGTTCTGGACTATGATAGCTTTGTACCGAG-----TTCTAGCCAGATAGAAGGTTACCGGGAGCTGGGGAGCGCTGGATTTGCTGCTGGGCTGTGCCGGTGCCCAGAAGGCA------GGACCTTGCAGAACCAGCCAGGTCCCTGGGAGACTGTCAGACCCACCAACCTCGTGGCATTCGCAGAGCTGAGATGCATTGGAAATTGCCTTGGGCACATCCCCAAAGATCAGGATGTGCCACCCCAGTCTGAAGGAGA---TAAAGTTGGGGGTAGGAGGGACGCAG-ATGCAAGTGATCAGTCTC---AGTCCTAGACATTGCCTTACTCTGCGGGTAGGAATTCAGGCTTCATTTTCCAGGGAAG--------TTCCTGACCTCTGAATGAGAGGGGCTGTGTAAGGCCAATGCCTAGG-AGGAAGGCAACGATGAGTAGAGGTGGGGGGAAACAAGTGTCAGGAAGA--------------------------------------------CTCAAA---------ATCTTC--------------------------------------------------------------CAGAGAAATTGT-----GCAGGGTCTTACCAGATCTGTCCTCAAAGCCATGCAAATTGCCTTCTTTGCAATGCA
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|
s mm5.chr6 28911866 1194 + 149721531 GTCCAGAGCATCCCTAAA---CACA--------CTTGCGACCTTCGAAGCAGGTGCATTCTGTGATGTCACAGGATGAAA----------TGAGAC----GACT--GTTCTTCGGGTACCAAAGGAAG--------------------------ACAAGTTG---CCCTGAGCTTG---------GGACCAGTTTCTC---CTCTGAGCAGCCAGGTTAGGTATGCAAAGAGCTGTCGGAAAAAGCAGCTGGCAGAGTCCTGGCTCACTGGTCTCCC---------------------------------TGTCCCCAAGCCAGCCTTCTGTAGCCTCT---------------------TGCTCCCTGCGGTGCTGGAAGCACCATCCCAAGGGACCCGTCCTTAA----------ACTACCGCTGCTCAGTAGCTGCTGGCCGGACCTCGAGGATTACCG-GCTCATACCAAGCGCCCCCAAACTT-------GCACTCGAGGGCGCG-----------------GCTGAAGTTCTCCCTCGAGGCGCCTAGAATGGAGCACT-------------------AGGTTGCTGCTGCC---ACTGTTGCTGGCCCGCTGGGTGGGGCGGGAGTTGGCGCTCGCAGGG-ACTGGGGCTGGCCGGACAGTTGCGCAAGTGGCACTGGGGCAGTTATAAGAGGGGCAGGCAGGCATGGAGCCCCGGAGGGATCCCTGCTCCAGCAGCTGCAAGGTAAGGCCCGGGGCGCGCTACTTTCTC---CTCCACCAGTCTTTCT--------AATAGCACCCCATCCAGCTCTGGAAATTAGAGAAACTGAGGCAAG-AAGGAGGTCATGTGGACAGCTTGGTGTTGAATT-CAGTAGTTTTGCAGCGAGGGACTCTGCAGACAGAGGGAAGGCTGTTGGGAGCTGAAAGGCATTAAATTCCTGGCTGGGCCG-GCCTGTGCCCACAGGGCACCAACCTGTTCTTGCAAAGCCAGCCAGGGCTCC--AAGCCTGTC-----------TTTGG-----TCTGCAGACTTGAGAT--------------------------------GGTTAGG-TTTCCCACAGCGTTCAGATGGAAAAAGCAAGGCTGGACGT-GTAGTGAGGCAG-CCACAGCTTTCCGCCTTCCTGAAGGCCAGATACAACCTTGCTTTGCTG-------TTGAGAGTTCATTTTCCAGT------------------------------GAGGGCCTACCTAGTACTAAAAC-------------TACTGTTGAATACAGGTGGGTAGAAA-AACTGTCAGGAAGA--------------------------------------------ACCCAGTCCCCTCCCACCTTCACCCCCAACTTGAGCGTGCACACACAAACACACACACACACAACCAAACAAACCATCATCAACAATAAAAAAGC-----TAGGGCTCTCTCCACATCTGTCC-CAAAGCCATTCAAATTCTCTTCTTTGGGGAACA
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s rn3.chr4 56184800 1195 + 187371129 GTCCAGAGCATCCCGAAA---CACA--------CTTGCGGACTTCGAAGCAGGTGCATTCTATGTCATCATAAGACGAAA----------TGAGAT----GACT--GTCTTTCGGGTACCAAAGGACAGTT---------------------------TTTG---CCCTGAGCGTG---------CGACTAGTTTCCC---CTCTGAGCAACCGGGTTAGGTATGCAAAGAGCCGTCGGAAGAAGCAACTG-----GTTCTGGCTCGCTGGCCTCCCTGT---------------------------------CCCAAAGCAGGCCTTCTATAGCCC--------------------GACTGCTCCCCGCGGTGCTGGCAGCACCATCCCAAGGGACCCGTCCTTAAACTACCTTAGACTACCGCTGCTCTGTAGCTGCTGGCGCGACCTCCAGGATTACCCGGCTCATACCAAGCGCCCCCAACTC--------GCACTCGAGGGAGCG-----------------GCTGAAGTCCTCCCTTGAGGCACCCAGAGCAGGACCTGGCTCCTGCGTGGAGCACTAGGCT-GCAACAGCC---ACCGTCGCTGACCCGCTGGGTGGGGCGGGAATTGGCGCTCGCAAGG-ACTGGGGCTGGCCGGGCAGTTGCGCAAGTTGCACTGGGGCAACTATAAGAGGGGCAGGCAGGCATGGAGCCCCGGAGGAATCCCTGCTCCAGCAGCTGCAAGGTAAGGCCTTGGGCGCATTACTTTCTC---CTCCACCAGTCTTTCT--------GATAGCACCCCACCCAGCCCTGGAAATTAGAGAAACTGAGGCAAG-AAGGAGGTAGTGTGGACAGCTTGGTGCTGAACTA----AGTTTTGCAGGGAAGGACTCTGCAGACGGAGCGAAAGAGGCTGGGAGCTGAGGGGCATTAGAATCCTGGCTGGGCCG-GCCTGTGCCCACAGGGCACCAACCTGTTCTTGCAAAGCCAGCCAGGACTCC--AAGCCTGTC-----------TTTGG-----TCTGCAGACTTGAGATGATTAGG----------GGACAGAGATGAACAGATCCGG----------------------------CAAGGCTGGGCGT-GCAGTGGAGCAGCCCACAGCTTTCTGCCTTCCTGAAGACCAGATACAGCTTCGCTTTGCTG--------TAAGAATTCATTTTCCATT------------------------------GAGGACCTACCTAGTAC-------------TAAAACTACTGTTAAGTAGAGATAGGTAGAAA-AACTGTCAGGAAGAACACACACACACACACACACACACACACACACACACACACACACCCCAAATGA------ACCATC---------------------------------------------------------ACCAACAACGAAGAAGCTAGGATAGGACTCTTTCCACATCTGTCC-CAAAGCCATACAAATTATCTTCTTCAGAAGACA
|
|
s canFam1.chr14 52867099 1062 - 63549963 GTCC-GAGCCGCTCCGAGGGCCGCG-----TGCCCGGCCGGGCTCGGGGCGT-TGCGCCCAGTGGAG---CGGGCGGAG---------------------------------CGCGCGCCTGGGCGCGGGA------GCCGACCCCACCCCGGCCCATCCCG---GCGGGCGCGGGGCGCACGGAGAGCC---------------------------------------GGGCCGTCGG-----------GGC--AGCTCCGCTTGGTCGAGGTccccgg--cgggcccgggccctcgaggacgcggc---------------gctcccgccagccgcc---------------------------------------------------------cccgcccttgg----------g---------------------------------------------gcc-----------------------------gc-cccgggggcgcg----cgggctccggca-gccgaggccctccctcgaggccc--------------------------gggccc-------gcggccgcc-----------------gccgggcggggcgggggctggcgctcggggtgcggc-gggcctgccggccAGTTGCGCAAGTTGCGCTCGGGCGGCTATAAGAGGGGCGGGCAGGCATGGAGCCCCGGAGGAGTCGCGGCGCCAGCAGCTGCGAGGTAAGGGCCCGGGCGCGCTGCTCTTTCCCTCTCCGCCGGTCTTTCTGGGCCAGGCACCACCCCCCACCC--CCCCGAACGCCGGGGAAACTGAGGCGCGCGAGGGGGCGGGGCGCATGGCTTGGTTCTGGACCTTGGCGGCTTCGTGGCGGGG----TTCTGACGGGAGGGAAGGCAGCGGGGAGAT--------CTGGATTCGGGGCCGGGCTGTGCCGGTGCCCACGGAGCAGGAATCTGTGC-CATGGAGCC-GCCGGGGCCCCAGGAGACTGTCAGAGCCCGCGGCCCAG------CTGC-----TGAGATGCTGTGGAAATTGCCTCGAGCACATCCCCAAAGATCAGGGTACCCTGCCCCCATCCGGAGGCGG---TGAAGTTGAGGGC-GCTGGGGGTTCG-GGATGAGCGCTGGGTTTC-TGAGGACTAGCT-----TTTGCTCCGCGGCTAAGAATTCGGGCATCATTTTCCAGCGGGGGGTCTTCATCTCTGGTGTCTGATTGCAAGGATTTGTATAAGGCCAAAGCCTAGGAAGGGAAGCACTGCGGAGTAGAGGCGGAAAGAAA-AC---TCAGGAAGAA-------------------------------------------CCCCAA---------ATGTCT--------------------------------------------------------------CAGAGAGATTCT-----GACGAGTCTCACCACATCTGGCCTTCAAGCCAAGCCAACGGTCTTCTTCACAGTGGA
|
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a score=-164.000000
|
|
s hg17.chr7 127475953 20 + 158628139 T-ACAATGAGGTGTCTCTGGG
|
|
s panTro1.chr6 129889807 20 + 161576975 T-ACAATGAGGTGTCTCTGGG
|
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s mm5.chr6 28913060 21 + 149721531 GAACAGCAGATTGTGGAGAAG
|
|
s canFam1.chr14 52868161 20 - 63549963 -TGAAATTGGGGTTTTCTGGG
|
|
|
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a score=-2153.000000
|
|
s hg17.chr7 127475973 19 + 158628139 GGTCAGAACTGG-----------------------TTATTAG
|
|
s panTro1.chr6 129889827 19 + 161576975 GGTCAGAACTGG-----------------------TTATTAG
|
|
s mm5.chr6 28913081 27 + 149721531 GCTTGTAACCTG---------------CACAGTTTTTGCTGG
|
|
s canFam1.chr14 52868404 39 - 63549963 GGTCACGGAAGGGCCTACTGCATGTTTCCCAACTGTTAC---
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a score=131142.000000
|
|
s hg17.chr7 127475992 545 + 158628139 GGAACTTCTAGCCAGGACTGCTAAATACGCGCTGTTGG---------CCCACCAGGCTCACCTATAGCCT-TCCTTCAGTCTGGGCTTGGTTTGGATTTCACTGTGGGTGCCATCGCCTTTACACTCCTGTTTCTATAGTTTAAAGATAGTGGTGCTTTGGGAAAG---TGACTCCTTAAATACAGTTAGGTCCAAGTGA-GACAAGTGGCCTGGCTGTCATTTCAGAATAGCAGCTTCCAAGAGG----------TGATTAATTTCTGTTGGAAGGGTGAT-CTTTGGGGAGGT--GGGTGAAGAGCAGAGACTTGGTGGTACCGTTCCAGGAGCACAGGCTCTCT-----TCCTTTGCA--GTGCAGAATGACCTCTGGCAGCCGGAGTTGTGTTTGTT--------CTGTAGGATTCTGAGGTGGGCCATGGGCAGCTGGAACTGGG-----GAATTTTGCCAATCTCTTTCATATTAGGATTGTCTGCAGAACCAGATATGGAGG------CTTCTAGCAACGTGAGTGCTCCTGTTCTAATGCCCTTAGAAACAAGAAGGCCACACTGATCATTTCTCTCACTTAGGCAGGGA
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s panTro1.chr6 129889846 545 + 161576975 GGAACTTCTAGCCAGGACTGCTAAATACGCTCTGTTGG---------CCCACCAGGCTCGCCTATAGCCT-TCCTTCAGTCTGCGCTTGGTTTGGATTTCACTGTGGGTGCCATCGCCTTTACACTCCTGTTTCTATAGTTTAAAGATAGTGGTGCTTTGGGAAAG---TGACTCCTTAAATACAGTTAGGTCCAAGTGA-GACAAGTGGCCTGGCTGTCATTTCAGAATAGCAGCTTCCAAGAGG----------TGATTAATTTCTGTTGGAAGGGTGAT-CTTTGGGGAGGT--GGGTGAAGAGCAGAGACTTGGTGGTACCGTTCCAGGAGCACAGGCTCTCT-----TCCTTTGCA--GTGCAGAATGACCTCTGGCAGCCGGAGTTGTGTTTGTT--------CTGTAGGATTCTGAGGTGGGCCATGGGCAGCTGGAACTGGG-----GAATTTTCCCAATCTCTTTCCTATTAGGATTGTCTGCAGAACCAAATATGGAGG------CTTCTAGCAACGTGGGTGCTCCTGTTCTAATGCCCTTAGAAACAAGAAGGCCACACTGATCATTTCTCTCACTTAGGCAGGGA
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s mm5.chr6 28913110 501 + 149721531 GGCATTTCTACCCAAGATGGTTAAATACACGTTGCCAGCCTGAGGTCCCTGCATGCCCCTCCTTCAGCTT-TCTTTCTTGCTGGGGTTAGTAT-TACTGCATTGTGGGTATGGT-GCCCTTACACTAC----TCTATGTCTTACTG-----GGTGCATTAGATATGCCACGATGCCCTGTGTACATTGCTGCTTGGGAGAGGACAA----------------------------------AGCAAG----------CCAGTCATTTCTATTGGGAGCATGGGACTCAGGAGAGGC--AGGCAGAGGGCAGGGATTTGGTGGCACCATCCTGGGAGCATAGGCTCTCTGAGCACTCTTTGCAAGGTGGGAATGGAATTCCAGTAGTGAGAGTCATATT--TT--------TCGTAGAGTT-TGTGATGGGCAGTGGTCAGCTGGGGCTGGGGG--AGAGCATCTCTGACCTATTGCTGATTTGTACGGTGCATGGAACCAAACTTGAAAGGAGGCATGTCTAACA--------GTCACTCTCCTGGTGACTATA--------AGGACCACACTGATCATGTATTTCATT----------
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s rn3.chr4 56186049 535 + 187371129 GGCATTTCTACCCAGGATGGTTAAATGCACATTGCCAGCCTGAGGC-CCCAACATGCCCCTCCTTCAGCTGTCTTTCTCGCTGGGGTTCATTA-GACTGCATTCTGAATATGGT-GCCCATATACTCC----TCTATGTCTT-------------CCTCTGGGAAG---TGGTGCGTTAAATATGGTCA---------GA-TACCA----CCGCGCTGCCTTGTGTGAATTGCTACTTGGGAGAGGACAAGGCAATCAAGTCATTTCTATTGGGAGCATAGTGTTCAGGGGAGGT--AGGCAGAGGGCGGAGACTTGGTGGCACCATTGTGGGAGCATAGGTTCTCTGGGCGTCCTTTGCAAGGTGGAAATGGACTTCCAGTAGTGAGAGTCATAATTTTT--------TTGTAGAGTTCT-TGGTGGACAGTGGTCAGCTGGGACTGGGG----GAGCATTTCTGAGCTTTTCCTGATCTGTATGGTACCTAGAACCAAACTTGAGAAGAGGCATGTCTAACA--GTCAG-GTCACTCTCCTGGAGAGTATA--------AGGACCACACTGATCATGTATTTCGTTGAGGCATGGA
|
|
s canFam1.chr14 52868443 527 - 63549963 GGCCTCTCTAGTCAATACCGC-AAATACCCGCTGTTGG---------CAGGTGGGCCCCAGGTCGAGTC--CCCTCCTCTCCTGGCCTGGTTT-ACATTCACTGTGAGTGTGGTTGTCTTCCCATTCCAGTTTCTAGAGCTTCAAGATGGTGGCATTTTGGAATTG---TGAATCCTTACTTACAGCTGGATCC----AA-GACAAGCGGCCTGCTTGTCATTTGAGAAGAGCAGTTTGGGAGAGGATGAAA----GGATTGATTTCTGCTAGAAGGGTGGT-CTTTGGGGTGGGCAGGGCAGAGGGCAGATACTTGTAGGC-CAGACCAAGGAGCATA-GTTCCTTGCCTCCCCCTTGTA----------GGACCT-----AACCACTGTCATCCCTCTTAAGTTCCCCTGTAGAGTTCTGAGGTGGGCAGCAGTGAGCTGGGACTAGTGGGAGAGAGATACCCAATCTCTTTCCCACCAGGTTGGTCTGCAGAACCA--------------------TAGTC--------GCTGCCATTCTAACGTCCTCATGAGCAGAGATGTCAAGCCAATCATTTCTCTCACTTAGGTAGGGG
|
|
|
|
a score=6927.000000
|
|
s hg17.chr7 127476537 18 + 158628139 GACAAGGCAAGAGAGAAA
|
|
s panTro1.chr6 129890391 18 + 161576975 GACAAGGCAAGAGAGAAA
|
|
s mm5.chr6 28913611 15 + 149721531 ---GAGGCACGAGAGAAG
|
|
s canFam1.chr14 52868970 18 - 63549963 GAGAAGGCAAGAGAAAAA
|
|
|
|
a score=208888.000000
|
|
s hg17.chr7 127476555 380 + 158628139 CAGT-----------------GGATGC--TTTTAGGTTCTTTCCCTTCCCAAGCAGTTGTGGACATTGGGCTGA-GGGGAACATTTCCACATTGGCTAAAGGAGCGTCCTCCTCATATTTTGTACATTTTATACCCAA--AATAA-CTCTTCTTGGTATTT-GGGGAAATATTTTCCTCCCCGTCC------------ATTCCAGGAAATGGCTCCAAGTGCCAAGGACAGAGCCAGGGAAGTTGCAATGAATTCCTGCCCGTCAGCCCCAGGCAGATGCCTTGCACGTCTGAGTGGCCCATGCAGAGCGTGGAGGTGGCCGCC----------------ACGGAACC-TGGGTCAATGT-CCCACCCCCG----CTTAGATGCCA-CCAGGGG--CGTGGGAGCCAAGGAG--AGAAGAGGGGCTCCAGGAAGGTAGAGTCC
|
|
s panTro1.chr6 129890409 384 + 161576975 CAGT-----------------GGATGC--TTTTCGGTTCTTTCCCTTCCCAAGCAGTTGTGGACATTGGGCTGA-GGGGAACATTTCCACGTTGGCTAAAGGAGCGTCCTCCTCATATTCTGTACATTTTATACCCAA--AATAA-CTCTTCTTGGTATTT-GGGGAAATATTTTCCTCCCCCTCC------------ATTCCAGGAAATGGCTCCAAGTGCCAAGGACAGAGCCAGGGAAGTTGCAATGAATTCCTGCCCGTCAGCCCCAGGCAGATGCCTTGCACATCTGAGTGGCCCATGCAGAGCGTGGAGGTGGCCGCC----------------ACGGAATC-TGGGTCAATGT-CCTACTCCCGCCCACTTAGATGCCA-CCAGGGG--CGTGGGAGCCAAGGAG--AGAAGAGGGGCTCCAGGAAGGTAGAGTCC
|
|
s mm5.chr6 28913626 436 + 149721531 CACCTCTCTCTCTCCCCCTCAGACTTCTTTTTTTGGTTCTTTCCTTTCTCAAGCACTCA-AGATACTGGGCTTA-GGGGAACATGCCCGTGTTGGCTAAAGAAGCATCCTTCTCATATTTGGTAGATCTCAAACCCAAGTAACAAGTTCTTCTTGGTATCTGGGGGGAATATTTTCCTCCTTCCCCCCCACCCCCCGTGTTCCAGGAAAAAGCTCAAAGAGCCAAGGACAGAGCCAGGGATGCTGTAATAAATTCTTGTCCATCAGCCCCGGGCAGATGCCTCGCATGTCTGAGTGACCCATGTGGGATGCAGAGATGGCTGCCGGAGACAATTCCCTTTACAGAGCA-CCAGTCATTGT-TGCACCCCATAC--CCTGTATCCCT-CTAGAGGCACATAGGATACAGGGAGATAGAGCAGGGTCTCCAGGAACATGGAATTC
|
|
s rn3.chr4 56186951 406 + 187371129 CAAT-----------------AACTCT--TTTTGGGTTCTGTCCTTCCTCAAGCACTCAAGGACACTGGGCTGAGGGGGAACATGCCCATGTTGACTAAAGAAGCATCCTTCTCATATTTGGTAGATCTTATACCCAAGTAACAAGCTCTTCTTGGTATCTGGGGGAAATATTTTCCTCCCCCTGT------------GTTCCAGGAAAAAGCTCAAAAAGCCAAAGACGGAGCCAGGAACGCTGCAATAAATTCCTGTCCATCAGCCCCAGGCAGATGCCTCGCATGTCTCGGTGACCCATGTGGGACGCAGAGATGGCTGTCCCAGACGATTCCCTTTACGCAGCCATCAGTCTCTGT-TGCACCCCAG----CCTGCATCCCC-CTACAGGCACATGGGGGACAGGGAGATAGAGCAGGGTCTCCAGGAACACAGAATTC
|
|
s canFam1.chr14 52868988 398 - 63549963 CAGT-----------------GAATGT--TTTTAGGTTCT-TCCCTTTTCTAGCAATAGAGGACATTAGGCTGA-GGGGAACGTTTCCATGTTGGCCAAAGGAGCGTCCTTCTCATATTTTGTACATCTTATGCCCAA--AATAA-CTCTTCTTGGTATTTGGGGGAAATATTTTCCTCCCCCTCC------------GTTCCAGGAAATGGCTCCAAGCGCCAAGGACAGAGCCAGGGAGATTGCAATGAATTCCTGCCTTTCAGCCGCAGGCAGATGCCTTTCATGTCTGAGTGGCCTGTGCAGGGTGTGGAGGTGGCCACTTGGGAGAGCTCTACTCACAGACCC---AGTCATTGTCCCCGCTCCAG----CCTAGATGTCACCCAAGGGGATGAGGGGGTTGAGGAG--AGAGATAGGGCTTCAGGGAAGTGGAGTCC
|
|
|
|
a score=22190.000000
|
|
s hg17.chr7 127476935 147 + 158628139 TTGTGTCTTGTGCATCTGTGAACAGCACTGGTATGATTTAAAGGAAAATTGAGCCAAATTTTCCGGCAGTCAGTT-----ACCCCATCCCCACCGGGGTAGGAGTCTGGCAGCCGCAGCTCCATTCTGGCCAGTCGGCAGAGAGCCTTGAAA
|
|
s panTro1.chr6 129890793 147 + 161576975 TTGTGTCTTGTGCATCTGTGAACAGCGCTGGTATGATTTAAAGGAAAATTGAGCCAAATTCTCCGGCAGTCAGTT-----ACCCCATCCCCACCGGGGTAGGAGTTTGGCAGCCGCAGCTCCATTCTGGCCAGTCGGCAGAGAGCCTTGAAA
|
|
s mm5.chr6 28914062 51 + 149721531 TTGTGGGGTGGATATC-------------------------------ATTGAG--------------------------------------------------------------------CATTCTGGCCCATGGAC--ACAGCCTTGGAA
|
|
s canFam1.chr14 52869386 152 - 63549963 TTGGGAGGTATGCATCCATGAACAGCATGCGTGTGATTTAAAGGAAAATTGAGCCAAATTGTCTTGCAGTCAATCAGTAGACCCTGTCCTTCCCAGCAGTAGGGTTCCATGGCAGCAGCTCCGTTCTGGCCTGCCAGCCCAGAGCCTTGAAA
|
|
|
|
a score=138750.000000
|
|
s hg17.chr7 127477082 576 + 158628139 TTCTTCTTTGTCCACACAGTTGTCTCAGAGAAACAG--AGAGGTT-GTTTCTGCTTAAAAACAACACACTTGGTGTCTGGGCCCACAGACTCCTTTGCACTTATTCCACGTGTGACAGCCAATGTGCCTCGTTGCTTAGCAGACAGCATGTTACCGTCTTTCCTGCTCAGTTTGTTAG--------------CTCTATGGAATGGAATTTATAATCAATGCCCATACCAACATTTCACTAATATCATAGGAGATTTAGTCTCCATCTGGGTGTACATTACATTTGC--TCTGGGG-TGCTCCAGGC--TGGGGGGTTGCCAAGGAAGAGAAGAGAAACCGCAGAGAAGAC---GGGAGGGCAGGGCAGGGGTCTCTGAGAAGGGGAGGGGTCCCAGAGTGCAGGAGCAGGAGCCAGGCTC---------ATGAAAGGGGCCACGGGCGGGAGTATCCAGGGACGGCAGTCAAGATGGAGCACAGCTTAGG--AAGCTGAAGGGAATCCTGGCCCACCTGGGTGCTAGAGGGCACATAGGAAGTGCAGGAAGCAGACCAAGGTCCCCAAGAGAGGGAGACCTGGACGCTGAAGCATTTTCTGTCTTTATTAAG-------------
|
|
s panTro1.chr6 129890940 576 + 161576975 TTCTTCTTTGTCCACACAGTTGTCTCAGAGAAACAG--AGAGGTT-GTTTCTGCTTAAAAACAACACACTTGGTGTCTGGGTCCACAGACTTCTTTGCACTTATTCCACGTGTGACAGCCAATGTGCCTCGTTGCTTAGCAGACAGCATGTTACCATCTTTCCTGCTCAGTTTGTTAG--------------CTCTCTGGAATGGAATCTATAATCAATGCCCATACCAACATTTCACTAATATCATAGGAGATTTAGTCTCCATCTGGGCGTACATTACATTTGC--TCTGGGG-TGCTCCAGGC--TGGGGGGTTGCCAAGGAAGAGAAGAGAAACTGCAGAGAAGAC---GGGAGGGGAGAGCAGGGGTCTCTGAGAAGGGGAGGGGTCCCAGAGTGCAGGAGCAGGAGCCAGGCTC---------ATGAAAGGGGCCACGGCGGGGAGTATCCAGGGACGGCAGTCAAGATGGAGCACAGCTTAGG--AAGCTGAAGGGAATCCTGGCCCACCTGGGTGCTAGAGGGCACATAGGAAGTGCAGGAAGCAGACCAAGGTCCCCAAGAGAGGGAGACCTGGACACTGAAGCATTTTCTGTCTTTATTAAG-------------
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|
s mm5.chr6 28914113 506 + 149721531 ---TTCTCTCTCCATACATTTGCCTTCCAGAAATGC--AGAGGTTAGACTATAAGGAAAGACAGGGCAC------TCAGATACACCAGGCAGATCAGCGCTTGCTTCCC--------------ATGCCCTGCTCTACAAAATACTGCATGATCCCATCTCTCCTGCT--GTCTGTGAG--------------CTCTCTAG------ATCTACAATC-ATGTCTGTGCTGACATTTCACCTAAACCA---AAGACTAAGACTCCATCTGTGTGCGCATTGTCTTTGC--CCTCAGG-AGTACCA-----CAGAGTTCTGC-----------AGGGAAGCCACACAATAGGCATAGGAAGCTCAGTATTGGGTTCCTTGGCAAAGACAGGGCACCTAGAGTGCTGGAAATGGA--CAGACATAGAATGGAAATAGACGGGTTGGTGGTGGGGAGTCACTGGGAATAACAGT-------GCACACAGCAGAGGTAAGACTGAAAGGAATCAG-----AACTAGGTAGGCAGGGATACAGGAGAGATGTGG-----------AGGCTTTGGAGGGAGAGAAAGACAGGCACTGGAGCACT-----------TTAAG-------------
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|
s rn3.chr4 56187357 507 + 187371129 TTCTCCTCTGTCTATCCAGTTACCTCCAAGAAATGC--AGAGGTTAGATTAGAGGGGAAGACGAGGCAC------TCGGATACACTAGGAGGCTCAGCAC-TGCTCCCCATGGGAAGGCAGATGTCCCCCACTCTACAGAAAACTGCCTGTTCCCATCTCTCTTGCT--GCCTGTGAG--------------CTCTCTGT-----GATCTACAATC-ATGTCCGTGCTGACATTTCACCAAAACCA---TAGACTAAGTCTCCATCTGTGTGCACATTGCCTTTGC--CCTCAGG-AGAACCA-----CAGAGTTCTGC-----------AGGGAAGCCACAAAGTAAGCAGTAAGAGATCAGCAT-GGGTCCCTTGGCAAAGACAGGGCACCTAGAGCACTGGAAATGGA--CAG-CTC---------GTGGAGGGGTGTGTGGTGGGGAGTCACTGGGAATGACAGTCCACACAGCACAGAACTATGT--AGGTGGGGGCGGG-------------GGGGAGGGGAGGATACAGAGGAGATGTGG-AGGCTCTCCAAAGCTTTGGAGGGAGAGAAAGCTACG-----------------------TTAAG-------------
|
|
s canFam1.chr14 52869538 532 - 63549963 TTCTACTTTGTCCACACAGTTGTCTTAGAGAAGTAGAAAGAGGTT-GTTTCTGCTTAAAAACAGCACACCTGATGCCTGGGCTCAGGGAGTTCTTTGTGCTTATTCTATGTGTGACAACAGATGTGC-------------AAACTGCATTTTACAAGCTTTCCTGCTCAGTTTGTCAGTATCCCCCCTGCCCCGCTCCAGAACTGGATTCGTGCTCGGTGCCAATGCCGACATCTCACTGATTTCATTGAAGATTTCATCCCCACCTGTGTGCACATTGTGCTTGTAGTCTGGGGATGCACTGGGCTGGGGAGGAGTGCAAAG-------GCGGGGGCTACAGAGAAGAA---AAGAG----GGAGAGGGGTCTCTGAGGAGGGCAGGAGGCCCAGAGC-----AGCTGGAGCCAGGCTG---------ATGAATGG---------------------------------------------AACTAAGG--AAGCTGAAAGGAATGGGGATCCACAT-GGTGCTGGAGGACACATAAAAGGTGCAGGAAGCCAACCAAGAGACCCGTTAAAGGGAGATGTGGAAGCCAAAGTGATTTCTATCA---TTAAGAAAGTTTCCTAGG
|
|
|
|
a score=26923.000000
|
|
s hg17.chr7 127477658 45 + 158628139 ACAACTCCGTAAGAATTCCTGCTGGGCCAAAGTGAATTCTAGGAT
|
|
s panTro1.chr6 129891516 45 + 161576975 ACAACTCTATAAGAATTCCTGCTGGGCCAAAGTGAATTCTAGGAT
|
|
s mm5.chr6 28914619 45 + 149721531 ACAGCTTCTTAGGTATTTCTGTGGGGCAAAAGTAAATTCTAAAAT
|
|
s rn3.chr4 56187864 45 + 187371129 ACAGTCTCTTAGGTACTTCTGTTGGGCACAAGTAAATTCTAAAAT
|
|
s canFam1.chr14 52870253 45 - 63549963 aTAATTTCCTAGGGATTCCTGCTGGGCAAAAGTGAATTCTACGAT
|
|
|
|
a score=101822.000000
|
|
s hg17.chr7 127477703 264 + 158628139 GCGACTTTAAGATGGGAGCAAGCGAACCATTGAGGAGGCAGGTTACCCTAGTTAGCCAATGCAGATCGAGAATGGGAAATCTTTCatttattcatgcaacagatatttaacgaagccctgccgtgttccaggcctgtgatagatgctggaacaggtacagaga----------tAc-------aggtgtcattaattgatcaggg--caacctctc---cttctgagt--cttgctggagcttcagatgc-ccctcacacagagctcgagggagcctc-aacaattgatc
|
|
s panTro1.chr6 129891561 264 + 161576975 GTGACTTTAAGATGGGAGCAAGTGAACCATTGAGGAGGTAGGTTACCCTAGTTAGCCAATGCAGATCGAGAATGGGAAATCTCTCatttattcatgcaacaaatatttaacaaagccctgccgtgttccaggcctgtgatagatgctggaacaggtacagagg----------tAc-------aggtgtcattaattgatcaggg--caacctctc---cttctgagt--cttgctggagcttaagatgc-ccctcacacagagctcaagggagcctc-aaaaattgatc
|
|
s mm5.chr6 28914767 245 + 149721531 ATGATTTTTCAGAGGGA-------AGCCACCTTAGGAACATGTTAGCCTGGTCAGC-------GATGAAGGATGGGGAATACTTTACTTATTCATTCAACAAAAATTGAATAAATGCCTGCTCTGTGTCAGGCCCTTGGTAGATGCTGAACCAAG------------------TGC-------AGGCGTCTCTAGTAGAGTGTGG--TGCCCCTCC---TCTCTGAGTGCATGGCAGGAGCTCCAGATCC-CCTTTGGACAGTGCTCCAGGGAGTCACTGAAAATTGATC
|
|
s rn3.chr4 56188012 256 + 187371129 ATGATTTTCAAGTGGA--------AGCCACCTTAGGGACAGTTTAGCCTGGTCAGCCAATGGTGATGAAGGATGGGGAATACTTTACTTATTCATTCAACAAAAGTTGAATAAACACCTGCCCTGCGTCAGGCCTTTGATAAATGCCGAACCAAG------------------TGC-------AGATGTCATTAATGGATTGTGGTACAGCCCCCCAAGCCTCCTGGTGTGTGGCAGGAGCTCCAGATTC-CTTCTGGACAGTGCTCCGGGAAGCCACTGAAAATTGATC
|
|
s canFam1.chr14 52870298 273 - 63549963 GTGACTTTGAGACAGGCGCAGGTGAACCACAGTAGAGGTAGGTTAACCTGGTGAGACAATGAAGATCAGAGATGGGAAATATttgatttat---ttcaacaattatttaatgagtacctgctgtgtgccaggccctCGGGAAATGCTGGAACAAGTAGCacgtccccgactcctgcacctggaagacatcactagttgatggagg--taccctctc--gcctctga----------ggaacttcagggccgcctccacacagtgctccaggtagctgctaaaaattgatc
|
|
|
|
a score=846.000000
|
|
s hg17.chr7 127477967 3 + 158628139 aga
|
|
s panTro1.chr6 129891825 3 + 161576975 aga
|
|
s canFam1.chr14 52870571 3 - 63549963 aga
|
|
|
|
a score=27321.000000
|
|
s hg17.chr7 127477970 319 + 158628139 agtcaggcaccatggctcacgcatataatcccagcactttgggaggccaaggcaggtggatcactggagcccaggagttccagatcagctggggcaacatggcaaaaccccatctctattaaaaaaaaaaaaagtaactggatgtgatggtacacacctgtagtcccagctacttgggaggctgagaggtgggagaattgcttgagcccgggaagtcgggggtccagtgagccttgatcacaccactgcactccagcctgagtgacagagcaagaccctgacacacacacacacacacacacacacacacacacagatt
|
|
s panTro1.chr6 129891828 305 + 161576975 agtcaggcaccatggctcacgcatgtaatcccagcactttgggaggccaaggcaggtggatcactggagcccaggagttccagatcagctggggcaacatggcaaaaccccatctctat---aaaaaaaaaaattaactggatgtgatggtacacacctgtagtccctgctacttgggaggctgagaggtgggagaattgcttgagcccgggaagtcgggggtccagtgagccttgatcacaccactgcactccagcctgagtgacagagcgagaccctgacacacacacacacacacacaca-----------agatt
|
|
|
|
a score=1692.000000
|
|
s hg17.chr7 127478289 3 + 158628139 aga
|
|
s panTro1.chr6 129892133 3 + 161576975 aga
|
|
s mm5.chr6 28915012 3 + 149721531 AGA
|
|
s rn3.chr4 56188268 3 + 187371129 AGA
|
|
|
|
a score=111486.000000
|
|
s hg17.chr7 127478292 257 + 158628139 gctgaaacaggagtagaaacctatctg-tatctctgATGA-GATCAGATC---------TTTCTGATGAACAGAAAGAATGTAACCCCTGTACTCACACCCTCTCTGCTGGTTACATATGTTAACACGATTTCTCAAATGAGGCTTTTGGTTGCAAATAAGAGAAAATCACTCACGCT-GGCCCTGTG--TTTTTCAAATTGTTTATTGTGATCAACATTTGAAAAAAGAGCCGAGACTCTCAAGAGTGCATTACCCACGGTAAGGGTGAA
|
|
s panTro1.chr6 129892136 257 + 161576975 gctgaaacaggagtagaaacctatctg-tatctctgATGA-GATCAGATC---------TTTCTGATGAACAGAAAGAATGTAACCCCTGTACTCACACCCTCTCTGCTGGTTACATATGTTAACACGATTTCTCAAATGAGGCTTTTGGTTGCAAATAAGAGAAAATCACTCACGCT-GGCCCTGTG--TTTTTCAAACTGTTTATTGTGATCAACATTTGAAAAAAGAGCCGAGACTCTCAAGAGTGCATTACCCATGGTAAGGGTGAA
|
|
s mm5.chr6 28915015 239 + 149721531 GTTGATGCAGGAGTTGAAATCTATTTGCTTTCCCTAATGG---------------------------GAATGAAAAGAATATAACCCCCTCACCCACACTGTGCCTACCAGCTAAGAATGTCAGCATGATTTCTCAAGCAAGGCCTTTGGTTGCAGAGAAGAGAAAATTGCTCCTGCTAAGATCAGTG--ATTTTCAAATTGTATACTGTGGCCAGCACTTGAAGAATGAGCTGAAATCCCCTAGAG---ATCACCTGCAGCAAGGGCAAA
|
|
s rn3.chr4 56188271 241 + 187371129 GTTGACGCAGGAGTTGAAATCTATTTGCTTTCCCTAATGG---------------------------GAATGAAAGCAATATAACCCCCTCACCCACACTGTGCCTACCAGCTAAGAATGTCAGCATGATTTCTCAAGCAAGGCCTTTGGTTGCAGAGAAGAGAAAATTGCTCCTGCTAAGCTTAGTGACTTTTTCAAATTGTGTACCATGGCCAACACTTGAGGAATGAGATAAAATCCCCACGAG---ATCACCTGCAGCAAGGGCAGA
|
|
s canFam1.chr14 52870574 251 - 63549963 gttgacac-----tggaaacccatgtgttatccctAATGAGGATCAGATCTGAGGGTGGTTTATGAGGAGTACGAAGACTATAACCCCCACACCCACACTCTGGCTGCTGGTTAAGTAGGTTAAC---ATTTCTGAAACAAGGCTTTCAGTTGCAGATAAGAGAAAACCACTCATGCT-AGCTCAGTG----TGTCAAACAACATATTGCAACCCACATTTAAAAAA-----CAGAACTCTTAGGAGTATATCACTCACAGTAAGTGAA--
|
|
|
|
a score=-201.000000
|
|
s hg17.chr7 127478549 4 + 158628139 TTTT-
|
|
s panTro1.chr6 129892393 4 + 161576975 TTTT-
|
|
s rn3.chr4 56188512 4 + 187371129 TCCT-
|
|
s canFam1.chr14 52870825 4 - 63549963 -TTTG
|
|
|
|
a score=191418.000000
|
|
s hg17.chr7 127478553 1096 + 158628139 ACTTCTTGACACTTATTTCTCTTACATGTATCTATCTGTCTC-----AAATGAAAAATATATTTAGAAAGTTGAAAGCTATCCAAGTGAGTATAAGAAAAGAGTATCTCACCCTGAAGGCTAAGGACAGGGAGGGC---------------------------CACCAGGCCTCACGAGGACCCAGGAACCACAAAGAAGGCT-AGGAAGGAGCACAGGCGGTGACCATACTCTGGCTCAGTGGCTATGTGGGCTCTGGTCTCTCTCAGCTGTTCCATGCATATGAGGCCAAATGTGGCTACCCTAGAGCTTCTGAGCCCTCAACAGAGATGAACTGGACTCTCTGCAGCCCCACTCTAAATTCCTAAGAGAGAAGTTGATTGACCCAATCAGGGTCAGGAGAAGGAAGGGAGGAGGAAAGGGAGGAGAGAAGAGCCTCTTCGTCTCTTGCCTACCACTGGCCAGGCAATTGTAGCCAAGGGGGCTGGAGTGTAAATGCAAACATAGCCATCAAGGGTtgtgtatgtgtgtgtgtgtgtctgtgtgtgtgtatgtgtgtCTCTTGGGTAGGTTAGA-TCTCCCAGGAGGTCCCTACTAAACAGACTTAAGCCCGCAAAATTTTAGCTCTCCAGCCTCACACACTCCACCCCTCTACCATATTGAATCTTCCCAAACCAACTATGGCTTTCCCTAACTCCGGAGc------ttggcctggaatgccctgcttcccctctttcccctggggaacgcctgtccttcaggcctcagttcacacactgcctcccttgcaaagctctccTCCCATCCCCGGAGTCCCT--CTTCCCCTTTGTTCTTTGGGTTCTATGCTTCTTCCCTCATAACTCCCACCAGGTTGTGTTAAAATGAGTTGTTCAAGGTCCTGTCTGTTCCACTAGATTCTGAGCAACTTGGAGAACGAAGATCCAAACTTCGCTGCCTTTATTTCCTCCTTTGTTCTTTTCTCATCCCCAAGTCCCTTCCAACTTGGAGTTATgaagaaaggaaggaaggaagggtgggagggaagaaCAGGAGGGGATCCCACAGG-AGAATGTGTATAGGGAGAGGACTCAGACTAGCTAAAGCTTTTCCCTCATAATTAATAGCAAATACC
|
|
s panTro1.chr6 129892397 1123 + 161576975 ACTTCTTGACACTTATTTCTCTTACATGTATCTATCTGTCTC-----AAATGAAAAATATATTTAGAAAGTTGAAAGCTCTCCAAGTGAGTATAAGAAAAGAGTATCTCACCCTGAAGGCTAAGGACAGGGAGGGCCACCAGGCCTCACGAGGACCCAGGAAGCACCAGGCCTCACGAGGACCCAGGAACCACAAAGAAGGCT-AGGAAGGAGCACAGGCAGTGACCATACTCTGGCTCAGTGGCTATGTGGGCTCTGGTCTCTCTCAGCTGTTCCATGCATATGAGGCCAAATGTGGCTACCCTAGAGCTTCTGAGCCCTCAACAGAGATGAACTGGACTCTCTGCAGCCCCACTCTAAATTCCTAAGAGAGAAGTTGATTGACCCAATCAGGGTCAGGAGAAGGAAGGGAGGAGGAAAGGGAGGAGAGAAGAGCCTCTTGGTCTCTTGCCTACCACTGGCCAGGCAGTTGTAGCCAAGGGGGCTGGAGTGTAAATGCAAACATAGCCATCAAGGGTtgtgtatgtgtgtgtgtgtgtctgtgtgtgtgtatgtgtgtCTCTTTGGTAGGTTAGA-TCTCCCATGAGGTCCCTACTAAACAGACTTAAGCCCCCAAAATTTTAGCTCTCCAGCCTCACACACTCCACCCCTCTACCATATTGAATCTTCCCAAACTAACCATGGCTTTCCCTAACTCCGGAGc------ttggcctggaatgccctgcttcccctctttcccctggggaacgcctgtccttcaggcctcagttcacacactgcctcccttgcaaagctctcctcccatccccagagtccct--cttcccctttgttctttgggttctatgcttcttccctcataactcccactaggttgtgttaaaatgagttgttcaaggtcctgtctgttccactagattctgagcAACCTGGAGAATGAAGATCCAAACTTCGCTGCCTTTATTTCCTCCTTTGTTCTTTTCTCATCCCCAAGTCCCTTCCAACTTGGAGTTATgaagaaaggaaggaaggaagggtgggagggaagaaCAGGAGGGGATCCCACAGG-AGAATGTGTATAGGGAGAGGACTCAGACTAGCTAAAGCTTTTCCCTCATAATTAATAGCAAATGCC
|
|
s canFam1.chr14 52870829 1007 - 63549963 ATTTCTTGACATTTGTTCCTCTTACTTGTGTTTATCTATATCCCCTGGATTAAAAAATATAATCAGAGAGCTGAAATGTACCCGAGTCTACGT---GGAAGAGTATCTCACAGTGGAGGCTAAGGACAGGGAGGGT-----------------------------CCAGAACCAACAAGG--TGAGGAACCAGAAAGAAGGTTCAGGAAGGAGCATAGGCACTGACTGTAACCCACCT--GTTACAGGATGAACTCTGGTCTTCCTCAGCTATTCCATGCACATGAGGGCAATCGCAGCTAACCTGGAGCTTCTGAGCCCTCAACAGAGACAAACTGGGCTCTCTGAAGCCCTACTTTCAATTCCTGGAAGAGATGGTAATTGACCGGATCAGGGTTTGGAGGAGAAAGAGA----TAGAAGGAGGAGAAGAGTA-TTCTCGGTCTCTTGCCTACCACTGGTCATGC----------------------------------------CCCTCCAGG---------GCGTGTGTGTGTGT-----------------------TCTGAGAGGGCAGATTCCCCCACGAGGT-----------GGAATCCAGCCTGGGACAttctagctctctagccttacatgctctatcattctgccatattgaattctcctaaacccaccatagtttttcccaactccacactgtcacattggtctggaatgccctgcttgccttcttccgcctggaggactcctgtccttaaggtctcagttcaaatactgtctcatttgcaaagctgtcctcacctttctagggttacttctttcctctatgctccccagattctaTG-TTCCTTCCTCATAACCTTGATGAGATTGTATTAAAGTGAGTTATTTAAGCTTCTGTTTGTTCCACTGGATTCTGAGTAGCTTGAATGACCAGCATCCAGGCTTCTCTGTCTCTA-TTCATCCTTTGTTTATTCCTTGTCCCCAAGTCCCTTCCAACTTAGAATTACGGAGA----CAGGAAAGCAGAGTAGAAGGAAAGGATGAGA-GGGAGCCCACAGGAAGAATTTCTGCAAGGAAAGG-CTTAGACCATCCAAAGCTTTTCCCTCATAATTAATAGCAAATATC
|
|
|
|
a score=680.000000
|
|
s hg17.chr7 127479649 3 + 158628139 ATG
|
|
s panTro1.chr6 129893520 3 + 161576975 ATG
|
|
s rn3.chr4 56190642 3 + 187371129 ACA
|
|
s canFam1.chr14 52871836 3 - 63549963 ACA
|
|
|
|
a score=28925.000000
|
|
s hg17.chr7 127479652 37 + 158628139 TTACCTGAATTTAATTCACAGTAGCATACAAAAGACT
|
|
s panTro1.chr6 129893523 37 + 161576975 TTACCTGAATTTAATTCACAGTAGCATACAAAAGACT
|
|
s mm5.chr6 28916836 37 + 149721531 TTATCTGAATTTAATTCATAGTAGCATACCAAAGACT
|
|
s rn3.chr4 56190645 37 + 187371129 TTATCTGAATTTAATTCATAGTAGCATACCAAAGACT
|
|
s canFam1.chr14 52871839 37 - 63549963 TTATCTGAATTTAATTCACACTAGCACATCAAGGATT
|
|
|
|
a score=1101.000000
|
|
s hg17.chr7 127479689 5 + 158628139 CGCTT
|
|
s panTro1.chr6 129893560 5 + 161576975 CGCTT
|
|
s rn3.chr4 56190682 4 + 187371129 -GTCA
|
|
s canFam1.chr14 52871960 5 - 63549963 CGCTT
|
|
|
|
a score=11000.000000
|
|
s hg17.chr7 127479694 77 + 158628139 TGTTCT-------CCCCA---------TTGATGTCATCAGAGG--------------------GCTGTGGG--------------CAGGCCTAATCTTGGCTCAGGAGGCCCTCCAGCCTGGATCTA
|
|
s panTro1.chr6 129893565 77 + 161576975 TGTTCT-------CCCCA---------TTGATGTCATTGGAGG--------------------GCTGTGGG--------------CAGGCCTGATCTTGGCTCAGGAGGCCCTCCAGCCTGGATCTA
|
|
s mm5.chr6 28917037 72 + 149721531 TGCTTC-------CCCCA---------TTGCTGC--TTGCAGG----------------------TAATGG--------------CAGGCCTGACCCAGGCTC-TGCTGTCTTCCAGTTCGGATCTG
|
|
s rn3.chr4 56190695 112 + 187371129 AAATCT-------ACTTAAAAAAAAATCTGATGG--CTGGAGAAGAAAGAAGAGAGAGTGTGTGCTTTGGGTCTCTTGGTAATCTCTGGTGTAATC--AGCCCGGGAAG----CTAGGCTGAGTTCA
|
|
s canFam1.chr14 52872041 84 - 63549963 AGCTCTCCTTGCCCCCCA---------CTGCCTTCATCAGAAG--------------------GCTATAGG--------------CAGGCCTGACCTTGGCCCAGCAAACCATCCAGCCTAGATCTA
|
|
|
|
a score=2238.000000
|
|
s hg17.chr7 127479771 4 + 158628139 AAGA
|
|
s panTro1.chr6 129893642 4 + 161576975 AAGA
|
|
s mm5.chr6 28917109 4 + 149721531 AAGA
|
|
s rn3.chr4 56190807 4 + 187371129 AAGA
|
|
|
|
a score=2198.000000
|
|
s hg17.chr7 127479775 10 + 158628139 GCAGCAGATG
|
|
s panTro1.chr6 129893646 10 + 161576975 GCAGCAGACG
|
|
s rn3.chr4 56190823 10 + 187371129 CCAGCAGATG
|
|
|
|
a score=29834.000000
|
|
s hg17.chr7 127479785 326 + 158628139 ggccaggctcggtggctcatgcctgtaatcccagcattttgggaggccgaggcgggtggatcacgaggtcaggagtttgagaccagcctggccaagatggtgaagcctcgtctctactaaaaatacaaaaattagccaggtgcggtggtgggcgcctgtatttccagctacccgggaggctgaggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgaggtcacgccactgcactctagcctgggcaacagagcaagactccgtcaaaaaaaaaataaaaaaataaaaaaataaaaaaaataaa
|
|
s panTro1.chr6 129893656 324 + 161576975 ggccaggctcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagtttgagaccagcctggccaagatggtgaagcctcgtctctactaaaaatacaaaaattagccaggtgcggtggtgggcgcctgtatttccagctactagggaggctgaggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccgaggtcacgccactgcactctagcctgggcaacagagcaagactctgtc--aaaaaaaataaaaaaataaaaaaataaaaaaaataaa
|
|
|
|
a score=911.000000
|
|
s hg17.chr7 127480111 4 + 158628139 GAGG
|
|
s panTro1.chr6 129893980 4 + 161576975 GAGG
|
|
s canFam1.chr14 52872125 4 - 63549963 GAGA
|
|
|
|
a score=44707.000000
|
|
s hg17.chr7 127480115 336 + 158628139 AGCACACATCTCTGCCCATCCTAACTCCCACTTTGACATTGAGGTCCCCAGGATGGAGGGTCTGCCTCCATCTGCCTTGTCCCCTG-CAATGGTGGGAAGGTGATGGAGCTCAAGTCTAGAGGCCACCAGCTTCTTAGGGAGG--TAGGAGGTG---------------GAGGGTGGGGTGC-GGGCCCTGCACACAACTGCCAAGTGAGGATGGGGGTGGG-GTCCACCTGAGGATAAGTAACAGTGAGGCTGGTGCAGAGGACCCAGGTGGAGGTAGACAGCAGAATTTGTGGTGGGGT--GGATGGCAC-ATTATATAAGCCTCTCTTGC------TGCCCTGT---TTACTGAGATTGTTTCAt
|
|
s panTro1.chr6 129893984 337 + 161576975 AGCAGACATCTCTGCCCATCCTAACTCCCACTTTGACATTGAGGTCCCCAGGATGGAGGGTCTGCCTCCATCTGCCTTGTCCCCTG-CAATGGTGGGAAGGTGATGGAGCTCAAGTCTAGAGGCCACCAGCTTCTTAGGGAGG--TAGGAGGTG---------------GAGGGTGGGGTGC-GGGCCCTGCACACAACTGCCAAGTGAGGATGGGGGTGGGAGTCCACCTGAGGATAAGTAACAGTGAGGCTGGTGCAAAGGACCCAGGTGGAGGTAGACAGCAGAATTTGTGGTGGGGT--GGATGGCAC-ATTATATAAGCCTCTCTTGC------TGCCCTGT---TTACTGAGATTGTTTCAT
|
|
s mm5.chr6 28917113 310 + 149721531 AGTGGACAGTTGTGCCCATCCCCACTCATTCCCTGAT--------------------GGG----------TCTGCCCTGTCCCCTG--AATGGAAGAAAGCTGAGGGTGCTCACACCT-GACATGACCAGTGTCATGGGGGGAATTAGGGTGTGATCTTGCCT---GCAGGGAATGTGGTA---------GCATAGACCTGCCCTCTGGGGATGTAGGTGAAGGATCACCTAA--CTAGGGGGTAGGGGAGGCTCTGTCCAGGATCCAGATGAGATCAGAAAGGGG-----GGGGGGGGGTTCTGGTGCCAC-CT--TACAAGCCTCTTGCACCAGTCTTGAGCCTT---TTTCTGAAGATGTGTTAC
|
|
s canFam1.chr14 52872129 313 - 63549963 AGCACAC-----------------CCCCTATCTTGGCATAGAGGC------------TGG----------TCTGCCTCATTTCCTAGGACCAGAGTGAAGGTGAAGGAGGTCATATCTGGAGGCCAGCAGCTTCTTGGGGGAAG-GAAGGGGTGAGCTTGTCTGTGGTGAAGGCAGAGGTGAGGGGGCCTTCATAGAA-------GTGGGGCAGGGTTGGGGGGGTCAGCTAAAGATGAATAGAGGTAGGACCGGCACCCAGGCCCCAGGTGAACCTGGGCAGTAGAAACTGTGGTGGCAT--GGAAGGTGTGGTTATGTGCACCTCTCCTCC------TGGCCTTGGAACTGTTGGAACTGTTTTCT
|
|
|
|
a score=29337.000000
|
|
s hg17.chr7 127480451 319 + 158628139 tatcttttttggcttttgtttttaagagatggggtcttgctgtgtcacacaggctggagtgcactgtgtgatcatacctcactgcagcctcgacatcctgggctcaggcaaacctcccaccttggcctcccaagtagctgggaccacaagcgtttgccaccacactcagctatttttatttttattttta--ttttttttagagatggggtcttgctgtgtcgcccaggctggtcttgaactcctgggctcaagcgatcctcctgccttggcctcccaaagccctgggattataggctgagccaccacacccagccACATT
|
|
s panTro1.chr6 129894321 321 + 161576975 TATCttttttggcttttgtttttaagagatggggtcttgctgtgtcacacaggctggagtgcactgtgtgatcataactcactgcagcctcgacatcctgggctcaagcaaacctcccaccttggcctcccaagtagctgggaccacaagcgtttgccaccacactcagctatttttatttttattattattttttttttagagatggggtcttgctgtgtcgcccaggctggtcttgaactcctgggctcaagcaatcctcctgccttggcctcccaaagccctgggattataggctgagccaccacacccagccACATT
|
|
|
|
a score=-14.000000
|
|
s hg17.chr7 127480770 3 + 158628139 TCA
|
|
s panTro1.chr6 129894642 3 + 161576975 TCA
|
|
s mm5.chr6 28917423 3 + 149721531 TGC
|
|
|
|
a score=2337.000000
|
|
s hg17.chr7 127480773 13 + 158628139 TCTGTGCAGCTCC
|
|
s panTro1.chr6 129894645 13 + 161576975 TCTGTGTAGCCCC
|
|
s mm5.chr6 28917426 13 + 149721531 CTGGAGCTGCCTC
|
|
s rn3.chr4 56191219 13 + 187371129 CTGGAGCTGCCTT
|
|
|
|
a score=109819.000000
|
|
s hg17.chr7 127480786 532 + 158628139 AGGGGCTCCACATTCT-ACTCTTCTCATTTCTTCTCCAGGGTACCC----------ATGGCAAGGGATGAGGGT--AGAAGATGGGGCA--GCCAGGCCTTGATTAAAGGAGAAGGAAGGCAGCCTGTGGAGAGG---GCAGCC---C---AGGGAG---TGCAGAGAGAAGTGGGCCATGAGGGAGA---CAGCAGAGTGCAGGCTGCGTCC---CAAATGAGCATACAGCCCACTGTGAGCCCACC--ATCTTCCTAGA-GA--CCCCTCTCCTCTCC-AGGAGCTGCTTCAGTAGCACTCA---------GAGGAAAGAATGATGC--------TGTATCAACATTTCAGCAGCTCATCTTTTAACTCTAAGAAAATGGCAGCTCCTAAATGTTCAA--AACTGCTTTGGAAACTTCT---GGAGAGAGGTTTTGCAGCTCAGGCAGACAGCTGATCGCGGCCTTTCTTCCACCCCAACCCATGCTCTCCCCATGCT--CTCCTGCCACAGCTGCAGCGGGCCCCTGGGTCCTACATTTGCAG-CCCTTTGTCTCTGAGCT-----CAGACTTCCAATTCCAAGCGGCAGCTGGGCAG
|
|
s panTro1.chr6 129894658 532 + 161576975 AGGAGCTCCACATTCT-ACTTTTCTCATTTCTTCTCCAGGGTACCC----------ATGGCAAGGGATGAGGGT--AGAAGATGGGGCA--GCCAGGCCTTGATTAAAGGAGAAGGAAGGCAGCCTGTGGAGAGG---GCAGCC---C---AGGGAG---TGCAGAGAGAAGTGGGCCATGAGGGAGA---CAGCAGAGTGCAGGCTGCGTCC---CAAATGAGCACACGGCCCACTGTGAGCCCACC--ATCTTCCTAGA-GA--CCCCTCTCCTCTCC-AGGAGCTGCTTCAGTAGCACTCA---------GAGGAAAGAATGATGC--------TGTATCAACATTTCAGCAGCTCATCTTTTAACTCTAAGAAAATGGCAGCTCCTAAATGTTCAA--AACTGCTTTGGAAACTTCT---GGAGAGAGGTTTTGCAGCTCAGGCAGACAGCTGATCGCGGCCTTTCTTCCACCCCAACCCATGCTCTCCCCATGCT--TTCCTGCCACAGCTGCAGCGGGCCCCTGGGTCCTACATTTGCAG-CCCTTTGTCTCTGAGCT-----CAGACTTCCAATTCCAAGCAGCAGCTGGGCAG
|
|
s mm5.chr6 28917439 476 + 149721531 AGGGTCTCTCCTCTCT-GTTCTTTTAA---CCTCTCTAGTGTGCCC-----------TGGCAGGGAGTCACAATGGAGAAGGTGAGGCA--------CATGGGTAGATGGCAGGGGAAGGCAGCC---GGAGAGG--AGCTTTC---T---AGT----------GAGACAACCTGAACATAAAACAGA----AGTAGAGGGCAGG----------------GAGGTCGCCGCCCA----GTGCCCACCCTGTCCTCCCAGATGG--TCCCTTTTCTTTCC-AGGCTCTGCTGCAATAGTCCCCA----GACGTGAGGAACACAGTGTAC--------TGCATCAGTATTTTAGCAATTCCTCTGCCAGCTCCGAGGCTATAACAACTCGTAAGTGGTTAA--ACTCAATTCAGGAACTTCT-----AGAAAGGTTTTTTTG--TGGCCGGGTAGCTGCCAGTAGCCTTGCTCCTTGCCCACCCACT----TCCTCACTCC--CTGGAATCACAGCCATGGC--------------------------CCCTTTCTCT-TGAGCTCCAACCAACCCCCCAATTCTAGCTGGCAACTAGAAAG
|
|
s rn3.chr4 56191232 501 + 187371129 AGGGCCTCCCCTCGCC-GCTGTTCTTTTAACCTCTCCAGTGTGCCC-----------TGCCAGGGAGTCACAGTGGAGAAGGGGAGGCA-----TGGCATGGGTAGATGGCCACGGGGGTTGGG----GAAGAGGCAGGCAGCC---CTCAGGTGAGCTTTCCAGTGAGAAGACCTGAGTAAAACAGA----AGCAGAGGGCAGGGAG---------------GTAGCCTCCCCA-----TGCCTACCC-ATCCTCCTGAATGG--CCCCTCTTCCTTCCAAGGCTCTGCTGCAATAGT-CCCA----GAAGTGAGGAACGTGGTGTACTACCTCAGTGTGTCAGTATGTTAGCAACTCCTCTGCCAGCTCCTAGGCTACAACAACTCCTAAG---TTAACCACTCACATCAGAAACTTCC-----AAAAAGGTTTTTTTG--TGGCCAGGTAGCTGCCAGTAACCTTTCTCCCTGCCCACCCATC-------------------------------CATCGGCTCCCTGGAATC-ACATCCATGGCCCCTTTCTCT-TGAGCTCCAA-CCAACCCCCAATTCTAACTGGCAACTAGAAAG
|
|
s canFam1.chr14 52872465 533 - 63549963 GGAGGCTCCATTTTCTGGTTTTTCTCCTTTCTTCTCCAGTGCACCAGTATAGGGGAATAGTAGGGGATGCTGGTAAAGATGATGGGGAGTGGCAGGGTCTTAATT-AGGGAGAGGGAAAGTGAC----AGTGAAA---GCTGGTGAAC---AGGAAG---TCCAGAGG----------ATGAGCAGGGCACCAGCAGAGTGAATGGGAGGCCTTGGCCAGTGTGCAAGCCACCCATTG------------GTACCCCCGGA-GGTACCCATCTCCCTCCCCAGGCCCCGCTTGAATAATGGGCAGAGAGAAATAAAGGAGACAGGATGT--------TGTATTAACATGTCAACAGTTCACCTTTTAACTCTCAGACAATGACAGCTCCTAAATGTTCAA--AACCATTTTGGAAACTTCTAGAGAGAAAAGGTTTTGCAGCCCAGGCAGCTGGCTGACAATCACCTTTGTCCT--------CCCTGTTCCTCCCACCTTGGCTCTTTCCAC-----CTGGGCACTGCTCGGTCT-ACTTGTGTGG-CCCTGTTTTTCTGAAT------GTGACTCCCAATCTCAGCTGTTAGCTGGATAG
|
|
|
|
a score=116682.000000
|
|
s hg17.chr7 127481318 693 + 158628139 GCTCACCAGCATGT---CCAGCCAGTACTAGGACATCAGCAGGAGC----CCAACCACCTCTTTCCAAAATCTCTCCTCATGTCTCTCCTAGTTTCCATCTCCATCCTTCTAGTCAGCCAGGCTGAAAACATT-----------------TGCTCCTCAGGGTGCAGAAGGGAAAGCTTTGCCTCCCTTCCTGGTGCTCACTGCCCCTGCGATTCCAGCCCAAGCCCTCCCCGGCTCCTCACC----------CTGGTGTCAGCTGGAAGCCACCATCTCCTAAACCCACCTGtgttcttccacctctgc--------cagggctgc-cctctcctccaccttcacaaactcaattcctacccattctcaggtcccttatcaaatgccatctcctccatgatgcctccctgattccccTGCTGGAaataatggtgataacagctaag--gcattggggttggctacgtgccaggcaaggagttggcactttacatgctttatctcatttcagccacataacatcgacaggt-ggcattatgattcatatcatccccatctgatagccaggaaaactgagtcccagagaggttagc-cactttcctagggccCTGTGCTCTGACTCAAGCATAGCTCTGAGGAACTCTAGCATTCATCAGTTTAAGCACCATGACTTTCTTTGCTGAGTCACCCAAGGCAT-TTCTTCATTTAAATGTTCTTCCTTGGCCAGGCGCAGTGGC
|
|
s panTro1.chr6 129895190 693 + 161576975 GCTCACCAGCATGT---CCAGCCAGTACTAGGACATCAGCAGGAGC----CCAACCACCTCTTTCCAAAACCTCTCCTCATGTCTCTCCTAGTTTCCATCTCCATCCTTCTAGTCAGCCAGGCTGAAAACATT-----------------TGCTCCTCAGGGTGCAGAAGGAAAAGCTTTGCCTCCCTTCCTGGTGCTCACTGCCCCTGCGATTCCAGCCCAAGCCCTCCCCGGCTCCTCACC----------CTGGTGTCAGCTGGAAGCCACCATCTCCTAAACCCACCTGtgttcttccacctctgc--------cagggctgc-cctctcctccaccttcacaaactcaattcctacccattctcaggtcccttatcaaatgccatctcctccatgatgcctccctgattccccTGCTGGAAATAATGGTGATAACAGCTAAG--GCattggggttggctacgtgccaggcaaggagttggcactttacatgctttatctcatttcagccacataacatcgacaggt-ggcattatgattcatatcatccccatctgatagccaggaaaactgagtcccaaagaggttagc-cactttcctagggccCTGTGCTCTGACTCAAGCATAGCTCTGAGGAACTCTAGCATTCATCAGTTTAAGCACCATGACTTTCTTTGCTGAGTCACCCAAGGCAT-TTCTTCGTTTAAATGTTCTTCCTTGGCCAGGCGCAGTGGC
|
|
s canFam1.chr14 52872998 712 - 63549963 GTCTGCCTGAGGTTCCACCAGCCGTAACCAGCAAATCAAGCAAAACTGAGCAAATCAGTGGTGTTGCAACTCCCTCCCCGTGCCTTTGCCAATCTCCATCTCCATCCTTCTTGTCACCTGGGCTGAAAGCATTAGCCTGGGAATGGTCAGAGCTCCTCACTTCCATGAAAG--AAGCCTAGCCTCCTTACTCGGCACTCA---------------GGGCCCAAGCCCTCCCCACCTCCTGGCCCATCACACCTCTCATGCAGGCTGTGAGCCACCGTGTTCTGAGCTCACAGGGGTTCTTCAGCCTCTGAGCCCTCGGCTGGGCTGCTCCTCTCCTCCACCTTCACAAACCCAATTCCTCCAGACTCTTATGGCCCTTATGAAATGCCACCTCCTCCAAGACACCTCCTTGATTCCTTAGCTGGAAATAGTGGtgataacagctaaggtgtattggggttgaccatatgccaggcaaggagttagcactttgcacacattacctcatttcatccacaggacagcctcaagtgggaatgacagtttgtatcattcccattttatagctgagaaaattgagtgtgagagagttcggcaaacttgcccaaggtcctgaactccaactcaagcagagttctgctgaactctagagctcataattttacacac---gtctccctcccctgagttaccctgGGCATGCTGTCTGTTTAAACATTCTTCCTTG---------AGTTAC
|
|
|
|
a score=58380.000000
|
|
s hg17.chr7 127482011 632 + 158628139 TCAggcccaatgcggtggctcacgcctgtaatctcaacactttgggaggccgaggtgggcagataatctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaaatgaggctgggcgtgatgactcacacctgtaatcccagcactttgggaggccaaggcaggtggattacatgaggtcaggagttcgagaccagcctggccaacatggtgaaatcctatctctattaaaaatacaaaaaattagccaggcatggtggcaggcacctgtaatcccagctacttgggaggctgaggcaggaaaatggcttgaacccgggaggtggaggttgcagtgagccaaggttgcaccattgcactccagcctgggcaaaaagagggaaacatcgtctaaaaaagaaaaaaaaaaaattagccaggctgggtggtgcatgcccgtaattccagctactcaggaggatgaagcaagagaattgcttgaacccaggaggcagagattacagtgagctgagatcacaacactgcactccagcctaggtaaagaacaagactccatctcaaaaataaataaataaaaataaaTGTTCTTCCTTGCAATGA
|
|
s panTro1.chr6 129895883 632 + 161576975 TCAggcccaatgtggtggctcacgcctgtaatctcaacactttgggaggccaaggtgggcagatcatctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaaatgaggctgggtgtgatgactcacacctgtaatcccagcactttgtgaggccgaggcaggtggattacatgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaattagccaggcatggtggcaggcacctgtaatcccagctacttgggaggctgaggcaggaaaatggcttgaacccgggaggtggaggttgcagtgagccaagattgcaccattgcactccagcctgggcaaaaagagggaaacatcgtctaaaaaagaaaaaaaaaaaattagccaggctgggtggtgcatgcccgtaattccagctactcaggaggatgaagcaagagaattgcttgaacccaggaggcagagattacagtgagctgagatcacaccactgcactccagcctaggtaaagaacaagactccatctcaaaaataaataaataaaaataaaTGTTCTTCCTTGCATTGA
|
|
|
|
a score=144074.000000
|
|
s hg17.chr7 127482643 854 + 158628139 AGTTAAATATGTAAATTCTCAAACCAGTTGCTTAAGGGCACAGTTTTGTTCTTTACCTATATTTTTAACAAATATTTTATGTAAGTAGTTGAC-AAAATCAAATACTGT-GTACACTACCGAGGCTTCCCTGGGAAAGCCATCAG-CCTCTGCCCCATCCCTTCCCACTCCTGATT-CCACTTTCCTGTGTTTCCATATCTTTTTCATGTCTGTTTCTGGCCCACAGTGGGCGATCAATACATGTTAGCCACCAACCATCAAACCTATATTGAGTAATTATGGTATGTCAGGCACTATGCTCAATGAAATTGTAttaggcttgtacaaaagtaattgtggtttttaagagtaatggcaaaaacggcagttactttcgcaccaacTATTTGCTGCCTTGAATTATTCCTCCTCTC-CTCATCCCTAAACCCTGCTCCTCCCAGCCATTCTTCCTCCCCTTCTTGGGCCATGGCCAGGCCCCACCCAGGTACTAAGACTCAGGTGAACCAAGGAAGACTTAATGCCCACTCTTTTCTGATGCCCATGTT--GGCATGTGTTAAGtcggttagcattaagtttggctgcatttagcagagacccaaaagaacagtgccttttaaaaggcagaggttatgtctctcacacacacccagcacaagtccaag-------------------------accagcatggcatctcagctccatcaa--cctcaggaaccgagctcctgcagctccctgccctgcagttgataaggtgaggtctttgtcctcctggttcaagatggtgctagaatgttggctaccatatctatagtccaggcatcagaatggagcaagggatgaaaaaggaagagatgaaggcacacgacaggttcc
|
|
s panTro1.chr6 129896515 855 + 161576975 AGTTAAATATGTAAATTCTCAAACCAGTTGCTTAAGGGCACAGTTTTGTTCTTTACCTATATTTTTAACAAATATTTTATGTAAGTAGTTGACAAAAATCAAATACTGT-GTACACTACCGAGGCTTCCCTGGGAAAGCCATCAG-CCTCTGCCCCATCCCTTCCCACTCCTGATT-CCACTTTCCTGTGGTTCCATATCTTTTTCATGTCTGTTTCTGGCCCACAGCGGGCGATCAATACATGTTAGCCACCAACCATCAGACCTATATTGAGTAATTATGGTATGTCAGGCACTATGCTCAATGAAATTGTAttaggcttgtacaaaagtaattgtggtttttaagagtaatggcaaaaacagcagttacttttgcaccaacTATTTGCTGCCTTGAATTATTCCTCCTCTC-CTCATCCCTAAACCCTGCTCCTCCCAGCCATTCTTCCTCCCCTTCTTGGGCCATGGCCAGGCCCCACCCAGGTACTAAGACTCAGGTGAACCAAGGAAGACTTAATGCCCACTCTTTTCTGATGCCCATGTT--GGCATGTGTTAAGtcggttagcattaagtttggctgcatttagcagagacccaaaagaacagtggcttttaaaaggcagaggttatgtctctcacacacacccagcacaagtccaag-------------------------accagcatggcatctcagctccatcaa--cctcaggaaccgagctcctgcagctccctgccctgcagttgataaggtgaggtcttcgtcctcctggttcaagatggtgctagaatgttggctaccatatctatagtccaggcatcagaatggagcaagggatgaaaaaggaagagatgaaggcacacgacaggttcc
|
|
s canFam1.chr14 52873710 748 - 63549963 AGCTAATTATG--------CAAACTGGTTGTTCAAGAGCACAGTTTTGTTCTTTACTTTTGTCTCTAACAAATAATATGTGTTAATAGTTGAC-AACATTAAATACTGCAGTGTATTCCCTGGGCTT--CTGAGAAAACCAGCAGTCTTCAGCCTTGTCCCTTCCTAGTCCCGATTCCCACCCTCCTGTGA-----------TTTCATCTTTGTACGTGGCCCACAGTGAGCGATCAGTACACATTAGCTGtcaaccagctgctatccactgagtaactattatgtgtcaggcgctgtgcttagtgAAGTTG------------------------------------------------------------------------TAGTTGCTGTCTTGAATTATCCCTCCCCTCTCTGGTCCCTAAACTCTGCTCTTGCCAGCCAT----------CTTCTTGGGCCACAGCCAGGCCCCACCCAGGT------ACTCAGGTGAACCCAGGAACACTCAACATCCACTTTGTCCTGATGCCCATGTCCAGGCATA---TAAatcaactagcattaagtttggttgcatttagcagagacccaaaataacagtggcttaaccaagacagaggttatgtctctctcacacacatagcacaagtctgggtggggcgtggtgggggcagtctgcagccagtatgtca-ctcagctccacaaagtcctcagggacctgg--tctccagctctctagcccaccattcataaggtga-----------------tccaagatggcaccagaaccccggctaccacatctgcagctcaggcat-gggatgggggaagggatgaaaaaggaagaggcagaggcacacaacc------
|
|
|
|
a score=244805.000000
|
|
s hg17.chr7 127483497 570 + 158628139 tgagagctggcacaggacacttctgcttatatttcactggccagaacttagtcacatggtcacacctagttgggagactctgagaagtaa----agtatttattctagatggccatatccctacc-taagacttggagttttctatgactggggaagaacggaagacaagatattgggaaagactagcagcctctactaAAAGGGTGATCtgtgttgatgtgcgtgtgtgtgtgatgtttgtatg---agcatgtgtgt-tatgtgttgt--gtgtTGGTGGGGCA--GATTCTTGCGAGCACTTTGGTCTCAGATGGACCTGCTACCAGTTCTCTCTGCAGACCCCCATAGGTTTCTCCTAAACCTGGCCT-CTCCTATTAGGCAGCCTTACTCAGCGGCAGCTTCTCAGCTCCATGTTTTCAAGGAACCACAATTTATTTCCAGCATCCACTGAAGCATATTATCAGTGGTGATAGAGGGGGCTTGTAAAACTGTTTTTCCACTTAGGTATTAGAGGGTGGCCATTATTTGAGAGTGAC-----TATGACCACAGTTAATCTGGTAATAAATTCTCTTGGGTAGGAG
|
|
s panTro1.chr6 129897370 570 + 161576975 tgagagctggcacaggacacttctgcttatatttcactggccagaatttagtcacatggtcacacctagttgggagactctgagaagtaa----agtatttattctagatggccatatccctacc-taagacttggagttttctatgactggggaagaatggaagacaagatattgggaaagactagcagcctctactaAAAGGGTGATCTGTGTTGAtgtgtgtgtgtgtgtgatgtgtctatg---agcatgtgtgt-tatgtgttgt--gtgtTGGTGGGGCA--GATTCTTGCGAGCACTTTGGTCTCAGATGGACCTGCTACCAGTTCTCTCTGCAGACCCCCATAGGTTTCTCCTAAACCTGGCCT-CTCCTACTAGGCAGCCTTACTCAGCGGCAGCTTCTCAGCTCCATGTTTTCAAGGAACCACAATTTATTTCCAGCATCCACTGAAGCATATTATCAGTGGTGATAGAGGGGGCTTGTAAAACTGTTTTTCCACTTAGGTATTAGAGGGTGGCCATTATTCGAGAGTGAC-----TATGACCACAGTTAATCTGGTAATAAATTCTCTTGGGTAGGAG
|
|
s mm5.chr6 28918210 567 + 149721531 TGGGAACTGCCACATGGCCCTTCTGCTTTTATTTAATCCATCAGTATTTGGCTGCATAACTGTACCTAATGG---------TAGAAGCAAGCCTGGCAGTTATTCTCCACAGCCACACGCCTCCCATAGGACTTGGAATGTCTTCAAATTCGGACAGAAAGAAAAATAAGACACGGGGAGAAACTAGCAGTCTCCAC-AGCATGGCTATGTATCTTGATGTGTCTGTGTATGTG-TGTGTTCATGTTACATAAGCATGT-TACGTGCTGT---------TGGGGCATCGATCCGTAACATGGCTTTGATCTCAGATGGATCTGTGACCACTTCTTTCTGCAACCCCAGATGCGTGTCCCAGAAGCCTGGCCT-ATCATCTTCAGCATACTTCCTCAGCGACAGCATCTCAGTCCCATGTTTCCAGAGCACTGTGATTTATTGCCAGCATCCACTGAGGCATATTATCCATGTCGACAGAGAGGCCTTGTAAACCTGCTTGTCTGTTCTGATAGTACAGGGCGGCCATTGTGTGAAAATAGCTACGATACGACCGTCGTTAATGTGCTAGTAAATTTGGTCGGGAAGGAG
|
|
s rn3.chr4 56192093 558 + 187371129 TGAGAGCTGCCACATGGCTCTTCTGCTTTTGGTTGGATGATCAGCATTTGGCTGCATACCTGTGCCTAACGG---------CAGAAGCAAGCCTAGTGGTTATTCTCCATGGCCACACCTCTCCCTTAGGACTTGGCGTCCTTTC-AACTGGGAAAGAAAGAAAAATAAGACATGGGGAGAAACTAGTAATCGCCAC-AACATGGCTATGTACCTTGATGTGTTAGTGTATG---TGTGCCTGTGTTGCATAAGCATGT-TATGTGCTGT---------TGGGACATCAGTTCTTAACATGACCTTGATCTCAGGTGGATCTGTGACCACTTCTCTCTGCAAGCGCCGATGTATGTCCCAGAAGCCTGGCCT-ATCATCTTCCGCACACTTACTTGGCAGCAGCATCTCGATTCCACATTTCCAGGGCGCTGTGATTTATTGCCAGCATCTACTGAGGCATAGTGTCCATGCCG--AGAGAGGCCTTGTAAACCTGCCTGTCCATTCTGATAGTACGGGGTGGCCATTGTGTGAAAATAGCTACGGTATAACCATAGTTAATCTGCTAGTAAGCTTGGTCAGGAA----
|
|
s canFam1.chr14 52874458 551 - 63549963 caagagctgccacacagcacccatgctgatacttaa-tggccagactttagtggcatagccaaacctagttgggggaagctgagaagtgt----agtatttattctcgatgg-cacatcaccatc-taa-acttgga-tattctattacttgggaagaaggaaagaatagatattggagacaactacctgcttctactaAAAGGGTTTGATGTGTTGATGTGTTTGTGTATGTGATGTGTGT-TG---TGTATGCAAGCACATGTATTGTGTGTGTTGGTGGGCCA--CGTTCTCTCCTCCACTTGGATCTCAGATGGACTTGGTATGGATTCTCT------------ACAGAACTCCCCTAAATCTGGCCTCCTCCTCTTAGGCAGATTTAC----CAGCAGCTTCTCAGTTCCACATTT-CAAGGAACTACAATGTATTTTCTGCATCCACTGAAGCATATTATCAGCGGTAATAGAGGGG-CTTGTAAAACTGTTTTCCCACTCAGATGTTACATGGTGGCCATTATGTGAGAGCGAC-----TACGAGCAGAGTTAATCTGGTAATAAATTCTCTCGGGAAGGAG
|
|
|
|
a score=100.000000
|
|
s hg17.chr7 127484067 1 + 158628139 G
|
|
s mm5.chr6 28918777 1 + 149721531 G
|
|
|
|
a score=207.000000
|
|
s hg17.chr7 127484067 1 + 158628139 G
|
|
s panTro1.chr6 129898234 1 + 161576975 g
|
|
s rn3.chr4 56192651 1 + 187371129 G
|
|
s canFam1.chr14 52875032 1 - 63549963 A
|
|
|
|
a score=100.000000
|
|
s hg17.chr7 127484067 1 + 158628139 G
|
|
s mm5.chr6 28918777 1 + 149721531 G
|
|
|
|
a score=2313.000000
|
|
s hg17.chr7 127484067 6 + 158628139 GAAAGG
|
|
s panTro1.chr6 129898234 6 + 161576975 gaaagg
|
|
s rn3.chr4 56192651 6 + 187371129 GGAGGG
|
|
s canFam1.chr14 52875032 6 - 63549963 AAAAGG
|
|
|
|
a score=4059.000000
|
|
s hg17.chr7 127484073 31 + 158628139 AAAGGATGCTTTAAGGAAGCATCTTGCCAGG
|
|
s panTro1.chr6 129898240 31 + 161576975 aaaggatgctttaaagaagcatcttgcccgg
|
|
s canFam1.chr14 52875093 31 - 63549963 TGAGAATGCCCAAGGGAGGCAACGGGCCAAA
|
|
|
|
a score=1922.000000
|
|
s hg17.chr7 127484104 10 + 158628139 AGACACAAAG
|
|
s panTro1.chr6 129898271 10 + 161576975 agacacaaag
|
|
s canFam1.chr14 52875229 10 - 63549963 CGGCACAAAA
|
|
|
|
a score=34863.000000
|
|
s hg17.chr7 127484114 213 + 158628139 CTAACAAGAGTGGAGCCTGCAG----------------------------CTGGAGCCGCAGAGCCTAATCACTACACCCGCCCATCTCTGCTAGGGTTTCATGACTTCGTATCGGGGATTAGCAGTATTTAACTCTGTTGCACAAACATTTGGTGTA-----TTATTCAGGTAACAAGTAGCTAATAGAGGAAGTTTTACTTTTTTAAGACATAA--------------------ATTTGCCTTTTCCCAAATTACTTGGTACAT
|
|
s panTro1.chr6 129898281 213 + 161576975 ctaacaagagtggagccTGCAG----------------------------CTGGAGCCGCAGAGCCTAATCACTACACCTGCCCATCTCTGCTAGGGTTTCATGACTTCGTATCGGGGATTAGCACTATTTAACTCTGTTGCACAAACATTTGGTGTA-----TTATTCAGGTAACAAGTAGCTAATAGAGGAAGTTTTACTTTTTTAAGACATAA--------------------ATTTGCCTCTTCCCAAATTACTTGGTACGT
|
|
s canFam1.chr14 52875350 265 - 63549963 CTAATGGGAACGGATTCTGTAGGGAAGTTAAGAATTTGCCTAGGGACTCACTGAAACCCTGGGACCTAACCACTATACTT-TCCACCTTTGCTAGGGCTTCATGGAATCATACTGGGGATTAGTTCTATTTAACTCCATTCCAAAAACCTTTGGTGGAAATGTTTACTCACATAATCAGTAGTTAATAGAGGGAGCTTCCACTTTTTAAGAGAGAAAACAAGCATAGAAACATCTGATGTGCCTCCTCCTGAATTACATAGGATAT
|
|
|
|
a score=15394.000000
|
|
s hg17.chr7 127484327 81 + 158628139 AGTAC-TTTTCATGTTTGAAGTTGAGATGTGGGTACAATACCATAGCTTTATTCCAGAGCAGGGTATTTGTTTCCAAATGCC
|
|
s panTro1.chr6 129898494 80 + 161576975 AGTAC-TTTTCATGTTTGAAGTTGAGATGTGGGTACAATACCATAGC-TTATTCCAGAGCAGGGTATTTGTTTCCAAATGCC
|
|
s canFam1.chr14 52875807 82 - 63549963 AGGATATTTTCATATTCGAAGTCGATGTGGGGGTGCAATCGCATAGCATCAGCCTAGAGCAAGGTATTTGTTTCCAAAGGCC
|
|
|
|
a score=818.000000
|
|
s hg17.chr7 127484408 38 + 158628139 ATGTTCCCAGCAGCTGCCCTTGACTGGGAATTGGGGTG-----
|
|
s canFam1.chr14 52875889 41 - 63549963 ATGGTCCCAGGAGGTATCTT--GTTGAGCATTGGGGTGGTTTG
|
|
|
|
a score=3630.000000
|
|
s hg17.chr7 127484446 17 + 158628139 TGATTTGGGCTTTTCCT
|
|
s panTro1.chr6 129898683 17 + 161576975 TGATTTGGGCTTTTCCT
|
|
s canFam1.chr14 52875930 17 - 63549963 TAATTTGGGGCTCTCCT
|
|
|
|
a score=8215.000000
|
|
s hg17.chr7 127484463 44 + 158628139 TAAATCCTTGA-----GGAGCTGGA---GGGGTGGGTGGCTCGCACTCCTGC
|
|
s panTro1.chr6 129898700 44 + 161576975 TAAATCCTTGA-----GGAGCTGGA---GGGGTGGGTGGCTCGCACTCCTGC
|
|
s mm5.chr6 28919675 52 + 149721531 TAAAGCCTTGGAGAGTGAAGCTGAGGATGGGGTGTGGGGGTGGCTGTACTTC
|
|
s canFam1.chr14 52875947 43 - 63549963 TAGAGGCTGGA-----GAAACTGTA----GGGTGGGTAGAAAGCACCCCAGC
|
|
|
|
a score=42483.000000
|
|
s hg17.chr7 127484507 107 + 158628139 TTTctgg---------atctgaatc--------------ctgactctgtcatggacctgtt-tgactttgggcaagttgactcctattcctgagccccatat-ttttctcttctgtgaaattcagattaaaa
|
|
s panTro1.chr6 129898744 107 + 161576975 TTTctgg---------atctgaatc--------------ctgactctgtcatggacctgtt-tgactttgggcaagttgactcctattcctgagccccatat-ttttctcttttgtaaaattcagattaaaa
|
|
s mm5.chr6 28919727 114 + 149721531 CATCTGTCCTGCGCACATCTCAG-C--------------CTGACACT---ACTTACCTTTTGTGACTTTGGAAAAGTTGGCTCATCTTTCTGAGCCTCATTTGTTTTCTCTTCTGTAAAATTCAGATTAAAA
|
|
s rn3.chr4 56193631 122 + 187371129 TTGCTGG---------ATTTCAGTCTGTCCCGCACACAGCTCAGCCTGACACTTATCGTTT-TGACTTTGGGAAACTCGGCTCATCTTTCTGAGCCTCATTTGTTTTCTCTTCTGTAAAATTCAGATTAAAA
|
|
s canFam1.chr14 52875991 105 - 63549963 TTTctgggtta-----agcagaagc--------------ctgactctgccacttgcttgtt-tga------gcaagttaacacattttcttgaccctccttt-tccccctttttataaatTTCAGATTAAAA
|
|
|
|
a score=281691.000000
|
|
s hg17.chr7 127484614 636 + 158628139 A-AACATGGCTTTGATCAAACATTATAAATAATATATAGACAGACTGCTTGTTTTTATTGTATTGCCAG-AAATGAATCCTACTAATATTGCCATCTATGGACAGAAAATGTATTACCTGTCTTCATCAAGACCCAGACGAGGAAGAACACGAAAAGCGGAGATTAATTTTACTGCCATCTCCAGAACCGTCATCCTAATATTTACTTACAT-TTTATTATTATTTCAGGCTCATGCACATATACTTAGCATGGATCATTGGCCACAGACTCGCATACATTTAACTTTATTACCTTT-TGCCTCATGTATCTCATTAAAATTTTGCTGCTTAATCAAGGATCTGCATATTATTTTAATTTTAGAATTCACAGTTCCAAGACTTTGAAAGTTTCAAGCGTTCTGGGTGaatgtgttatgc--tctctcccgccaccatgtctttataccccctgatttctcagccact-atggcaaccactttctactcttagtagcccatatttag--tccaatccccagctcaggagacacttcttccaggg--agccccctgtgccttccagtagtatcttgtacctgccctttttgcaaagctctttcctcctggcttagaatggcccattgacctgtttgtttctcctattaa
|
|
s panTro1.chr6 129898851 635 + 161576975 A-AACATGGCTTTGATCAAACATTATAAATAATATATAGACAGACTGCTTGTTTTTATTGTATTGCCAG-AAATGAATCCTACTAATATTGCCATCTATGGACAGAAAATATATTACCTGTCTTCATCAAGACCCAGACGAGGAAGAACACGAAAAGCGGAGATTAATTTTACTGCCATCTCCAGAACCTTCATCCTAATATTTACTTACAT-TTTATTATTATTTCAGGCTCATGCACATATACTTAGCATGGATCATTGGCCACAGACTCGCATACATTTAACTTTATTACCTTT-TGCCTCATGTATCTCATTAAAACTTTGCTGCTTAATCAAGGATCTGCATATTATTTTAATTTTAGAATTCACAGTTCCAAGACTTTGAAAGTTTCAAGCGTTCTGGGTGaatgtgttatgc--tctctcccgccaccatgtctttataccccctgatttctcagccact-atggcaaccactttctactcttagtagcccatattcag--tccaatccccagctcaggagacacttcttccaggg--agccccctatgcgttccggtggtatcttgtacctgccctttttgcaaagctctttcctcctggcttagaatggcc-attgacctgtttgtttctcctattaa
|
|
s mm5.chr6 28919841 610 + 149721531 AGAGCGTACCTTTAAGCAAGCACTATAAATAATATATAAACAGACTGCTCGTTTTTTCCGTACTGTCAGCGGGTGAGTTATACTAATATTACCACCGATGGAGGACAGCTATGTTACCTGTTCCCACCAATACCCAGATGAGGAAGAACAGAAAAAGGAGAAGTTAGCTTTTCTGCCATCTCCATAATCTTCATCCTAATATTTATGAATGTATTTATTA----TTCAAGCTCATA-GCACACCCTGAGCATGGATCACTGGCTACAGGCTTGCATACATTTAACTTTATTATCTTTCTGCCTCATGCATCTCATTAGG--CCTGTTTCTTAATCAAGAATCTGCACA--ATGTTAATTTTAAAACTTGGGGCTCCATGACTGGAAA---TCCCAGCGCTCTAAGTAAACGTGCTGTGC--TGTCTCCTACCTCCACACCTTTGCA-CTTCTGGGCTCTTGGTCACTCGTGGTAACTCTGCTCTACTCT------CCCAACCTGGA--CTCGGTCTTTA-----------ACAACAGCCAAGGCAAACCCCTTCTGGACTTCTGTGATATCTTACACTTGTCC-CCTTGTGAAGCGCCATCTTCCTGCATTGACATAGCCTACTTGCTTGTCTGTCTCTCCTGTT--
|
|
s rn3.chr4 56193753 580 + 187371129 AGAGCGTACCTTGAAGCAAGCACGATAAATAATATATAAGCAGATTGCTCGTTTTGG-CGTACTGTCACAGGGTGAATTACATTAATACTACCACTGATGGAGGACAGCCGTGTTACCTGTTCCCACCAAGACCCAGATGAGGAAGAACAGAAA-----GAAGTTAGTTTTTCTGCTGTCTCCCC--TCTTCATCCTAATATTCATGAACGTCTTTATTA----TTCAGGCTCATACGTACACCCTTAGTACGGTTCACTGGCTACAGGCTTGCATACATTTAACTTTATTACCTTTCTGCCTCATGCATCTCATCAGGCCTCTATTTCTTAATCAAGAATCTGCAGA--GTGTTAATTTAAAAACCGATGGCTCTATGACTGGAAA---TTCCAGCATTCTAAGCAACCATGCTAGGT--CCTCTCCTGCCTCCACGACTTTGCA-CGTCTCGGCTCTTGGCCACTTGTGGTAACTGTGTTCTACTCT------CCCAGCCTGTT--CTTGGTCTTCGACACCAGC-----------CAAGGCAAACCCA--------TTCTGTGATATCAAACACTTGTCC--------------CCTCCCCTTGT----GGAGCGCCTACTTGCTTGTCTGTCCCTCCTGTT--
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s canFam1.chr14 52876290 628 - 63549963 -AAGCATACCTTTGAGCAAGCCttataaataatatataaata----gtttatttctattatattGCCAGAATATGAATTATACTAATATTGCCACCTGTGGACAGAAAATGTATCATCTGTTTTTATTAAGACCCAGATGAGACAAAACATAAAAAGCAGAGATTAACCCTTTTGCCTTCTCCAGAACCTTCATGCTAATATTTACTTACAT-TTGATTATCATTTCAGGCTCATGCACACAACCTTAGCATGGATC-------ACAGACTCGCATACATTTAACTTTATTACCTTT-TGTCTTATGTATCTCATTAAAACTTTGCTGCTTATTCAAGGATCTGCATA--TTATTAATATTAGAATTCATTGTGCCATGACTTTGAAAGTGTCAAACATTCTGGATGaacacgttatatagtctcttctgcctccatgcctttaaaccaactgttttct-ggcctcttgtggcaaccactctccattcttactaacccatactgggtttttaatacccagctcaggtgacacctctttcagag--agccccctttgtactccTGTGACATCTTGCACTTGTTCTTCTTGTGAAGTTTATTCTTCCTGTATTGGAATGGTCTGCTTACCTGTTTATCTCTCTTATTAA
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a score=407957.000000
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s hg17.chr7 127485250 994 + 158628139 actgtaagccactcgagggtagagagcatctgttgttcaccattgcatcctcggtgctgagcactgcgtctgacatattatttagaaggtcagtaagtgctagtgggatTCAGGCTCCCAGTGGGTGGGAGAGAAAGGACGTAAGGAAGCAAGTGGTAAAGGCCCTCACAGA-GTATCAGCAGGCTGGTGTGA-GGGAGAAATGCAGAGGATGGGTGAGTAGCA-----TAATCGCTAATGAT-AGGGTAATGATAGAGCACATTTCACAACACCTTt-aagccctttcacgtgcatcagataatttgatcctcataaaagcctagagatagatatattacagg-gatgaaggtggagtattttgtggttatgtgatatg-tttaaaattatgcagtgagtaaatgactgggttcaaaccagaccttaaaagtctgttatctttccCTCG-AGCATGCAATGAAGTCTACATCATCCCTACCATGTCCATTTGATCACACCCTGGCCTCACAGCTCTGTGGTCTACAGGATACCTCATGGTGGTTTTATTGACCAGACAATAATCCTCTTTCTAAGGGGATGCATTTCATTAATACATATGTAGATCATGAATTGTCTTTGACTTTGAGGGGATGGTAGC----CAGAGCAGAAAGCAAAGCTGATTTTCATCCCCGTCTGGTAATGTGGTTGGTAATGTGAAGA-TGGGTGTATTCTGAGATACCGGCTCCTTGCAGTGTGTGGTTCCTTCTGTTTTCAGGCCC------AAGAAGCCCATCCTGGGAAGGAAAATGCATTGGGGAACCCTGTGCGGATTCTTGTGGCTTTGGCCCTATCTTTTCTATGTCCAAGCTGTGCCCATCCAAAAAGTCCAAGATGACACCAAAACCCTCATCAAGACAATTGTCACCAGGATCAATGACATTTCACACACGGTAAGGAG---AGTATGCGGGGACAAA---GTAGAACTGCAGCCAGCCCAGCACTGGCTCCTAGTGGCACT-GGACC-CAGATAGt
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s panTro1.chr6 129899486 994 + 161576975 actttaagccactcgagggtagagagcatctgttgttcaccattgcatcctcggtgctgagcactgtgtctgacatattatttagaaggtcagtaagtgctagtgggatTCAGGCTCCCAGTGGGTGGGAGAGAAAGGATGTAAGGAAGCAAGTGGTAAAGGCCCTCACAGA-GTATCAGCAGGCTGGTGTGA-GGGAGAAATGCAGAGGATGGGTGAGTAGCA-----TAATCACTAATGAT-AGGGTAATGATAGAGCACATTTCACAACACCTTt-aagccctttcacatgcattagataatttgatcctcataaaagcctagagatagatatattacagg-gatgaaggtggagtattttgtggctatgtgatatg-cttaaaattatgcagtgagtaaatgactgggttcaaaccagaccttaaaagtctgttatttttcccttg-agcatgcAATGAAGTCTACATCATCCCTACCATGTCCATTTGATCACACCCTGGCCTCACAGCTCTGTGGTCTACAGGATACTTCATGGTGGTTTTATTGACCAGACAATAATCCTCTTCCTAAGGGGATGCATTTCATTAATACATATGTAGATAATGAATTGTCTTTGACTTTGAGGGGATGGTAGC----CAGAGCAGAAAGCAAAGCTGATTTTCATCCCCGTCTGGTAATGTGGTTGGTAATGTGAAGA-TGGGTGTATTCTGAGATACTGGCTCCTTGCAGTGTGTGGTTCCTTCTGTTTTCAGGCCC------AAGAAGCACATCCTGGGAAGGAAAATGCATTGGGGAACCCTGTGCGGATTCTTGTGGCTTTGGCCCTATCTTTTCTATGTCCAAGCTGTGCCCATCCAAAAAGTCCAAGATGACACCAAAACCCTCATCAAGACAATTGTCACCAGGATCAATGACATTTCACACACGGTAAGGAG---AGTATGCGGGGACAAA---GTAGAACTGCAGCCAGCCCAGCACTGGCTCCTAGTGGCACT-GGACC-CAGATAGt
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s mm5.chr6 28920451 878 + 149721531 ACCCTGGGCCTCTGGAGGGCAGGAAGTATCTTCCCTCC---------TCCTTGGT-----GTACTGAATCTGAC------------AGGTGGATAAATGCTGTTTGGATTCAGATTCCCA-TG---GGGAGAGGAAGGAAGTTATAAATC-AGTAATGAAGACCTCAACAGACATAGCAAGAGGCTGCTGCTATGAGACTAATG----GGAAGGGGGAG--GCAACCCTGGGTCCCTAATGAT-----------------------------------------CTTCTGAATGCATTAGCTAATTTGATCTTCATAAAAGTTTGGGGATGGGTAGACTACAGG-GAGGAAGGTAGAGTCTTGAGTGGTTATGTGGCATA-CCTGCAGTTAGGCAGCGAGTAAATGTCTACATTCAACCTGGACCATAAGAGTTGGTTCTCTTTCCCTTGAAGTACGCAACAAAGCCCCCGTCA---CCATCAAATCCATCTGA-CAAGTCTGGG---------TCCATGATCTCTAGGACTCATCACTATGGTTTTATTGGACTGTCAATA---CTCTTCCCAGGGGTACACATTTCACTAATCTAGGT-TCCATAATGAATTGTCTTTGACTTTGGCAAGATAGTAGCAAGTTAGGGAAGAAAGCACATTTTA--TCCGTCCACATCCTATAGCA-GGATGGCAGCAGGACCATTGGATGGATTC----ATATTGGGCTCTTGAAAAGTGTCATTCATTCTGTCTGTAGGTGC---AAGAAGAAGAAGATCCCAGGGAGGAAAATGTGCTGGAGACCCCTGTGTCGGTTCCTGTGGCTTTGGTCCTATCTGTCTTATGTTCAAGCAGTGCCTATCCAGAAAGTCCAGGATGACACCAAAACCCTCATCAAGACCATTGTCACCAGGATCAATGACATTTCACACACGGTAGGAGT---CTCATGGGGGGACAAAGATGTAGGACTAGAACCAG-------------------------------------AGT
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s rn3.chr4 56194333 881 + 187371129 ACCCCGAGCCGCAGGAGGGTAGGAAGTATCTTCCC------------TCCTTGGT-----GTCCTGCGTCGGAC------------TGGCGGAGAAATGCTGCTAGGATTCAGATTCCCAGT----GGGAGAGGAAGGAAGTTATGGATC-AGTAATGAAGACCTTAACAGACATAACAAGAGGCTGCTGCGGTGAGACTAACA----GGAAGGGCGAG--GCAGCCCTGGGTCCCTAATGAT-----------------------------------------CTTCCACACGCATTAGCTAATTTGATCTTCATAAAAGCTCAGAGAAGGGTAGACCATAGG-GAGGAAGGT--AGTTTTGAGTGGTTATGTGATATACCTTGCAGTTAGGCAGTGAGTAAATGACAACATTCAACCTAGACCATAAGAGTCGGTTCTCTTTCCCTTGAAATATGCAACAAGACCTCCATCA---TCATCAAATCCATTTGA-CAAGACTTGC---------CCCATGATCTATAGGACACATCACTGTGGTTTTATCAAACTGTCAATA---CTCTTCCCAAGGGTGGGCATTTCATTGATCTAGGT-TCCATAATGAATTGTCTTTGACTTTGACAAGATGGTAGCTAGTTAGGGAAGAAAGCAAGTTTTA--TCTATCCACAGCCTACAGCA-GGTTGGCAGCAGCACCACTGGATGGATTT----ATATTGGGTCTT--GAAAATGGCATTCCTTCTGTTTCTAGGTCCAAGAAGAAGAAGAAGACCCCAGCGAGGAAAATGTGCTGGAGACCCCTGTGCCGGTTCCTGTGGCTTTGGTCCTATCTGTCCTATGTTCAAGCTGTGCCTATCCACAAAGTCCAGGATGACACCAAAACCCTCATCAAGACCATTGTCACCAGGATCAATGACATTTCACACACGGTAGGGAGTCTCTTGTGGGGAAGCAAA---GGAGAAGTAGGGCTAG----------------------------AAC-CAG--AGT
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s canFam1.chr14 52877114 964 - 63549963 AGCATAAGCAACCTgagagtagagagcatctgttgttcacgattctatccttggtgcctggcgctgtatctgacacatta-gcagatcttctgccagtgctggctgcatTCAGGCTCCCAGT----AGGAGAGAAAGGAAGTAATAAAACCAGTGATAAATGCCATCACAGAGGTATCGGTAGGCTGCCATGG-GAGAGTAATG----GAGACGGCAAGTAACA-----TAATCTCTAGTAATAAGGATAGTAATATAGTACATTTCACAACACCTTTAaagctcttgcacatgcattgtctcatttgatcctcataaaagtctagagataggtatattgcaggagatgaaggtggagtttttagtggttttgtgatctg-tttaaagtcaggcagctattaaatggctggattcagaccagaccttaaaagcc---catctcttcctcacagcTTGCAATAAAGTCA----TA---CCACGACATCCATTCACTCATGCACTGG-CTTACTGCTCTGTGGTCTATTCCACATCACTTTGTTGTTTATTTGGTCAGGTCTTA---CT-TCCCCACGGACATGCATTTCATTAATGTAATTCTAGATAACAAATTGTCTTTGACACTGA---GATGATTGC----TATGGCAGAAGGCAAGTCTCATTTTTATCCACATCCGATGATGAGGTTGGTAACAGGACTTATGGGTATTTTCTGAGATACCAGCAACCTGCTATGCGTGGTTCCTTCTGTTTTCAGGCCC------AAGAAGCACAGCCGGGGAAGGAAAATGCGTTGTGGACCTCTGTGCCGATTCCTGTGGCTTTGGCCCTATCTGTCCTGTGTTGAAGCTGTGCCAATCCGAAAAGTCCAGGATGACACCAAAACCCTCATCAAGACGATTGTCGCCAGGATCAATGACATTTCACACACGGTAGGGAG---GGTCTGGGAAGACAAA---GTAGAACCAAGACCGG-----------CCCTTGGGGAAACCAGGACCTCAGATGGT
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a score=38721.000000
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s hg17.chr7 127486244 184 + 158628139 ccaagaaacatttattgaacgcctcctgaatgccaggcacctactggaagctgagaaGGATTTGAAAGCACAGGGC-TCCACTCTTTCTGGTTGTTTCTTTTGGCCCCTCTGCCTGCTGAGATTCCAGGGGTTAGTGG--------------------------------------------------------TTCTAATTCTAAACCACTCCAAGAACATTTGATTTTGCTACATGTTT
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s panTro1.chr6 129900480 184 + 161576975 ccaagaaacatttattgaacgcctcctgaatgccaggcacctactggaagctgagaaGGATTTGAAAGCACAGGGC-TCCACTCTTTCTGGTTGTTTCTTTTGGCCCCTCTGCCTGCTGAGATTCCAGGGGTGAGTGG--------------------------------------------------------TTCTAATTCTAAACCACTCCGAGAACATTTGATTTTGCTACATGTTT
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s mm5.chr6 28921329 216 + 149721531 CTGAGAAAC--------------------ATGTCATGCACCTCCTAGAAGCTGAGA---GTTTATAAGCCTCGAGTGTACATTATTTCTGGTCATGGCTCTTGTCACTGCTGCCTGCTGAAA-TACAGGGCTGAGTGGTTCCATTTCTAAACCCAGCATCTAGACTGCTCAGTTGTACTGCCAGTATCGCATGATTCTAATCCTAAGCCACCTTAGGGA-ATTTAACTTTCTCTTATACTC
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s rn3.chr4 56195214 174 + 187371129 CTGAGAATCA--CAGTGAGCGCCTTCTGAGTGTCATGCACCCCCTAGAACCTGAGA---ATTTGTAAGCCTAGGGTGTCCATTCTTCCTGGTTATGGCTCGAGACACTACTGCCTGCTGGAA-TTCAGAGCTGAGTGG--------------------------------------------------------CTCCAATTCTAAACC-----TAGACTGCTCAGTTGTGCTATGTGAGT
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a score=4036.000000
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s hg17.chr7 127486428 21 + 158628139 CCATTTAAAAATCATAGGATT
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s panTro1.chr6 129900664 21 + 161576975 CCATTTAAAAATCATAGGATT
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s mm5.chr6 28921545 21 + 149721531 CCATTAAGAAACCATAAGGTG
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a score=41671.000000
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s hg17.chr7 127486449 469 + 158628139 TGggctgggtgtggtggcttgtacctgtcatcccagcactttgggaggccaaagcaggaggatcattcgagcccaagagttcgagaccagcctgggcagcatagggagaccccatctctacaaaaataataaaaaatgttagctgggcatggtggtgtgtacctgtggtcccagctaggggaggctgagatggaaggatcacctgagcctgggaggttgaggctgcagtgggccctgatcatgccaccgtgctccagcctgggtgacagagtgagaccttgtctcaaaataaataaataaataaataaaAGTCATAGGATTTgatcaggcatgatgggtcacatctgtaagcccattgctttaggaggccaaggtaggaggatcagttgaggccaggagttcaagaccagcctgggcaacatggcaagacctctctctctaatttttaaaaaaataaaaaTTAAAGATA
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s panTro1.chr6 129900685 463 + 161576975 TGggctgggtgtggtggcttgcacctgtcatcccagcactttgggaggccaaagcaggaggatcattcgagcccaagagttcgagaccagcctgggcagcatagggagaccccatctctacaaaaataataaaaaatgttagctaggcatggtggtgtgtacctgtggtcccagctaggggaggctgagatggaaggatcacctgagcctgggaggttgaggctgcagtgggccctgatcatgccaccgtgctccaacctgggtgacagagcgagaccctgtctcaaaataaataaataaataaa----aaTCATAGGATTTGATcaggcacgatgggtcacatctgtaagcccattgctttaggaggccaaggcaggaggatcagttgaggccaggagttcaagacca-cctgggcaacatggcaagacctctctctctaatttttaaaaaa-taaaaattaAAAATA
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a score=2762.000000
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s hg17.chr7 127486918 18 + 158628139 AGAAAAAAATCATAGGAT
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s panTro1.chr6 129901148 18 + 161576975 AGAAAAAAATCATAGGAT
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s rn3.chr4 56195445 18 + 187371129 ATGATGAAACCATAAGCT
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a score=7364.000000
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s hg17.chr7 127486936 37 + 158628139 TCTCATGAGGCCTCACGTGCTTATTTTCAACCTACCA
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s panTro1.chr6 129901166 37 + 161576975 TCTCATGAGGCCTCATGTGCTTATTTTCAACCTACCA
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s mm5.chr6 28921733 33 + 149721531 TATCATAAGGCC----ATGCTCATTTTCCCTCTGCCA
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s rn3.chr4 56195469 34 + 187371129 TAGCATATGGCGGCC-ATGCTCACATTCA--CTGCCA
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a score=154550.000000
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s hg17.chr7 127486973 604 + 158628139 AGGGGAAACCCAGGCCTCAGCGATTAGCTGAGC----------CACATGCAGGCACAG------------------------CCACTG-----TCTCTTTCCTTCCTGTCCCCTCTGTCCCCACCTTCTGCGCTCGCCTTCCTCCCTGACTTCACTTCCTTGAATCTTAGTGCCTACGACCAGAGGGAGCTGTGAAGTTCCTTG----TGTCCCATTGGCAGGAA-CAAGACCCCCAGAAGCATCTCCTCAGGGC------CTCTA-----TCCCATCTC-TAGATGTGCTTGTCATTAGG-Gttct-------------tgtagttccagctgatctctggccctgccgctcaaagatacccaaaagagcgagtctaccctttttcacattcaaccctctactgatttgcaaatagcagtcagtgcccaccctggtcttttctctggggtccagcaggcctagaccttcagccattttcctgatgaGGTCTGTAtttgaaattaggaagattaagtttgaatcttcacacttctgat----gtctgtgagatcttcagcaagttccttact--gtctttaagccttgt-tttcatcatctggataatggggatatcacacacta-ttcacaaggttgttatgaggcctaaattagctaaagcaATTGAATCCTCCTTACCC
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s panTro1.chr6 129901203 605 + 161576975 AGGGGAAACCCAGGCCTCAGAGATTAGCTGAGC----------CACATGCAGGCACAG------------------------CCACTG-----TCTCTTTCCTTCCTGTCCCCTCTGTCCCCACCTTCTGCACTCGCCTTCCTCCCTGACTTCACTTCCTTGAATCTTAGTGCCTACGACCAGAGGGAGCTGTGAATTTCCTTG----TGTCCCATTGGCAGGTG-CAAGACCCCCAGAAGCATCTCCTCAGGGC------CTCTA-----TCCCATCTCCTAGATGTGCTTGTCATTAGG-GTTCT-------------TGTAGTTCCAGCTGATCTCTGGCCCTGCCGCTCAAAGATACCCAAAAGAGCGAGTCTACCCTTTTTCACGTTCAACCCTCTACTGATTTGCAAATAGCAGTCAGTGCCCACCGTGGTCTTTTCTCTGGGGTCCAGCAGGCCTAGACCTTCAGCCATTTTCCTgatgaggtctgtatttgaaattaggaagattaagtttgaatcttcacacttctgat----gtctgtgagatcttcagcaagttccttaat--gtctttaagccttgt-tttcatcatctggataatggggatatcacacacta-ttcacaaggttgttatgaggcctaaattagctaaagcaATTGAATCCTCCTTACCC
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s mm5.chr6 28921766 609 + 149721531 C-AGGAAACCCAGCCCTTGGTGGCTAGCTGAGCATGTAAGGTACACAT-CAGACCTGGGAGAACCTGGGTTCCTCCCTGCTTCCACAGACCACCCTCTCCCCTTCCTTAGCCCCCTGTTTCTGCCTCTCTCATTCTCTTTCATCCATGAAACTACTTCCTTGAAT-TTAGTACCCA-GGGCATAAGAATCCCTAAAGGTCATGG----TGTCCCATTGACACGTGACCAGCTTCCCAGCAGTGTCTCTACTGGGC--------------------------AGGAGGAG-----CAGTAGG-TTTCTAATGGTTTTTAGCTACAGCTTCTGCCCACCGCTCACCC-ACTTTTCAAAGTCACACAGAA-AACAACCTTTCCCTCCTTTACAACCAGTCCT-TGTGTAGCTGCTGATAGTGGTCAGTGCCCACCATGTTC-TTCCTCCGAGGCCCAGCA-GCCTACATCTTCAGCCATTTCCTCAG------ATGTATCTAAGCT------------ATGTGCATATCACCATATCTGCTTCCCATCTGCAAGATCTTAGGCCAGTTCTCCGGT-GGGTTTTAAACCTTGA-TTTTACCATCTTGATAAGGGAGACATCATATCATA--TCACCAAGTTGTTCTAAGGCTTAAATGGGGTGTAGTGAAAGA--CTTTCTT----
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s rn3.chr4 56195503 609 + 187371129 C-AGGAAGCCCAGCCCTCCATGGCTAGCTGAGCATGTAAGGCTCACAT-CAGGCCTGGGAGAACCCACGTTCCTCCCTGATTCCACAGACCACTCTCTCCCCTTCCTTAGCCCTTTGTTTCTGTCTCTCTCTTTCTCTTTCCTCCATGAAACTACTTCCTTGAGT-CTAGTTCCCA-GGGTATAAGAATCCCTAAAGGTCATGGCATTCATTCCATTGACATATGACTGGCTTCCCAGCAGTGTCTCCACTGGGCAAGAGGATCTAACGGTTTCTAACTA-CAGCT------------------TCT--------------------CCTGCCAGTTCCTGTTAC-TCCTTTCAAAGTCACACAGAG-AGCAATCTTTCCCTCCTTTACAACCAATCTTCTGTGAAGTTGCTGACAGCTGTCAGTGCCCACCGTAGTC-TTTCTCCGAGACTCAGCA-TCCTACATCTTCAGTCATTTCCTCAG------AAGTATCTAAGCG------------ATTCGTATCTCACCACATCTGCTTCCCATCCGTAAGATCTTAGGCAAGTTCTTCCCGTGGTCTTTAAACCTTGAGTTTTACCATCTTGACAATGGTAACATCATATCACA--TCACCAAGTTGTTCTAAGGCTTAAACGGGCTACAGCAAAAGA--CTTCCTT----
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s canFam1.chr14 52878103 516 - 63549963 AGGGGCCATGGTGGCCTTGACACCTCCCCGTGG----------TACAAACAG---------------------------------CAG-----CCTTttctcttcctct-ctctccatctcccaccttctccctctccttcctctCTGATGC---------AAGTCCTAGTGCCTAGGACCAAAGAGAGCCATAAAGGTCTTTG----TGTCCCACTGGCAGGTGACCAGACTCCTAGTTGCATCCCCTCTAGGC------CTCTG-----TCACATCTCTAGAATGTACTCATCATTGGGCATTCT------------------TCCTAGATGAACTCTAGCCC-----------------------CGTGAAGCTTCTCCCTGTTACTGTTAGCCCT-----------------------------------------------GGGGTCCA-CAGGCCTAGACCTTCAGCCATTTCCCAGATGACAGCTGTAtttggaattaggaagaccaaatgtgaatcttcacgcttctgttctctatctgtaaaatcttaagctaattcctcaat--gtcttgaagcctcag-tttccatagcctgatagtgggactatcataagggacttcacaagattgttaggaga-ttcagttagttaaagcaagtgaTCTCCCCTCACCC
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a score=1231195.000000
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s hg17.chr7 127487577 3160 + 158628139 CCTGCATGGAGCTCTCTGGAGACTTCCACGTCTCCTGGTCATTGTGGGTGTCTTATGGTA-GTCTTGGGCAGTTAGGGAGAAGTTAGGTGTCTGGAAGCAAAGATGGCTCAGAACTAGATAGAGTC-TTGGGCATTTTATA-GATAAAAACTCTT--GTCTCCtttaaaaataataaaaaaaaattaGCTGGGCATATTAGCCACTCAGCAAGACTGCACGTGATAGATCCCGAGTGCCCCACCTTGGGTGGTGTAATACACAATATCACGGGAGCCCCGGGTAGTAACCACGGAGGTGTCAGCCTCAGTGCTGTGGGCAGATG-GATGGGGAGAGCC--TCCCGG-AACTGGAGTCACTGGAGCA----------------------------GGGTTGGGGGGCCTCACTGAGGGTACGGCCTTGATCTCTAAGGAGGAGGGACTGCCTGGAAAAGC-TGACTGGGAGGGAGGACTCGGCTGGGGGTAGAAGGGA----------CTAGGGAAGGCTGGGGGTGGGGGTGCTTATGGAGGACCTCAGATGCCTGGGGAACAGACTCCACTAAATAAAACATATGAAACCATGGCTGGTTCTTCAGCAGAGGCCATGTAGAGAAAGGAATGACCTAGGAAAGTTGGCCTGGAAGTGGAGGGAAGGATGGTGTGGGAAAAGCAGGAA--------TCTCGGAGACCAGCTTAGAGGCTTGGCAGTCACCTGGGTGCAGG-ATACAAGGGCCTGAGCCAAAGTGGTGAGGGAGGGTGGAAGGAGGCAGCCCAGAGAATGACCCTCCATGCCCACGGGGAAGGCAGAGGGCTCT-GAGAGCGA--TTCCTCCCACATG-CT-GAGCACTTGTTCTCCCTCTTCCTCCTGCATAGCAGTCAGTCTCCTCCAAACAGAAAGTCACCGGTTTGGACTTCATTCCTGGGCTCCACCCCATCCTGACCTTATCCAAGATGGACCAGACACTGGCAGTCTACCAACAGATCCTCACCAGTATGCCTTCCAGAAACGTGATCCAAATATCCAACGACCTGGAGAACCTCCGGGATCTTCTTCACGTGCTGGCCTTCTCTAAGAGCTGCCACTTGCCCTGGGCCAGTGGCCTGGAGACCTTGGACAGCCTGGGGGGTGTCCTGGAAGCTTCAGGCTACTCCACAGAGGTGGTGGCCCTGAGCAGGCTGCAGGGGTCTCTGCAGGACATGCTGTGGCAGCTGGACCTCAGCCCTGGGTGCTGAGGCCTTGAAGGTCACTCTTCCTGCAAGGACTACGTTAAGGGAAGGAACTCTGGCTTCCAGGTATCTCCAGGATTGAAGAGCATTGCATGGACACCCCTTATCCAGGACTCTGTCAATT--TCCCTGACTCCTCTAAGCCACTCTTCCAAAGGCATAAGACCCTAAGCCTCCTTTTGCTTGAAACCAAAGATATATACACAGGATCCTATTCTCACCAGGAAGGGGG-TCCACCC-AGCAAAGAGTGGGCTGCATCTGGGATTCCCACCAAGGTCTTCAGCCATCA---ACAAGAGTTGTCTTGTCCCCTCT-TGACCCATCT-----------------CCCCCTCACTGAATGCCTCAATGTGACCAGGGGTGATTTCAGAGAGGGCAGAGGGGTAGGCAGAGCCTTTGGATGACCA--GAACAAGGTTCCCTCTGAGAATTCCAAGGAGTTCCATGAAGACCACATCCACACACG--CAGGAACTCCC--AGCAACACAAGCTGGAA---GCACATGTTTATTTATTCTGCATTTTATTCTGGATGGATTTGAAGCAAAGCACCAGCTTCTCCAGGCTCTTTGGGGTCAGCCAGGGCCAGGGGTCTCCCTGGAGTGCAGTTTCCAATCCCATAGATGGGTC-TGGCTGAGCTGAACCCA---TTTTGAGTGACT----CGAGGGTTGGG-TTCATCTGAGCAAGAGCTGGCAAAGGTGGCTCTCCAGTTAGTTCTCTCGTAACTGGTTTCATTTCTACTGTGACTGATGTTACATCACAGTGTTTGCAATGGTGTTGCCCTGAGTGGATCTCCAAGGACCAGGTTATTTTAAAA---AGATTTGTTTTGTCAAGTGTCATATGTAGGTGTCTGCACCCAGGGGTGGG-GAATGTTTGGGCAGAAGGGAGAAGGATCTAGAATGTGTTTTCTGAATAACATTTGTGTGGTGGGTTCTTTGGAAGGAGTGAGA-TCATTTTCTTATCTTCTGCAATTGCTTAGGATGTTTTTCATGAAAA------------TAGCTCTTTCAG-GGGGGTTGTGAGGCCTGGCCAGGCACCCCCTGGAGAGAAGTTTCTGGCCCTGGCTGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAAAGGGCTGAAAGCCATTTGTTGGGGCAGTGGTAAGCTCTGGCTTTCTCCGACTGCTAGGGAGTGGTCTTTCCTATCATGGAGTGACGGTCCCACACTGGTGACTGCGATCTTCAGAGCAGGGGTCCTTGGTGT-GACCCTCTGAATGGTCCAGGGTTGATCACACTCTGGGTTTATTACATGGCAG-----TGTTCCTATTTGGGGCTTGCATGCCAAATTGTAGTTCTTGTCTGATTGGCTCACCC-AAGCAAGGCCAAAATTACCAAAAATCTTGGGGGG--TTTTTACTC-CAGTGGTGAAGAAAACTCCTTTAGCAGG-TGGTCCTGAGACCT-GACAAGCACTGCTAGGCGAGTGCCAGGACTCCCCAGGCCAGGCCACCAGGATGGCCCTTCCCACTGGAGGTCACATTCAGGAAGATGAAAGAGGAGGTTTGGGGTCTGCCACCATCCTGCTGCTGTGTTTTTGCTATCACACAGTGGGTGGTGGATCTGTCCAAGGAAACTTGAATCAAAGCAGTTAAC-TTTAAGactgagcacctgcttcatgctcagccctgactggtgctataggctggagaagctcacccaataaacattaagatt-gaggcctgccctcagggatcttgcattcccagtggTCAAACC-GCACTCACCCATGTGCCAAGGTGGGGTA-TTTACCACAGCAG--CTGAACAGCCAAATGCATGGTGCAGTTGACAGCAGGTGGGAAATGGTATGAGCTGAGGGGGGCCGTGCCCAGGGGCCCACAGG-GAACCCTGCTTGCACTTTGTAACATGTTTA-----CTTTTCagggcatcttagctt---ctatta-----tagccacatccctttga---aacaagataactgagaatttaaaaataagaa-----aata--
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s panTro1.chr6 129901808 3157 + 161576975 CCTGCATGGAGCTTTCTGGAGACTTCCACGTCTCCTGGTCATTGTGGGTGTCTCATGGTA-GTCTTGGGCAGTTAGGGAGAAGTTAGGTGTCTGGAAGCAAAGATGGCTCAGAACTAGATAGAGTCATTGGGCATTTTATA-GATAAAAACTCTT--GTCTCCtttaaaaataataaaaaaaatttaGCTGGGCATATTAGCCACTCAGCAAGACTGCACGTGATAGATCCCGAGTGCCCCACCTTGGGTGGTGTAATACACGATATCACGGGAGCCCCGGGTAGTAACCACGGAGGTGTCAGCCTCAGTGCTGTGGGCAGATG-GATGGGGAGAGCC--TCCTGG-AACTGGAGTCACTGGAGCA----------------------------GGGTTGGGGGGCCTCACTGAGGGTACGGCCTTGATCTCTAAGGAGGAGGGACTGCCTGGAAAAGC-TGACTGGGAGGGAGGACTCGGCTGGGGGTAGAAGGGA----------CTAGGGAAGGCTGGGGGTGGGGGTGCTTATGGAGGACCTCAGATGCCTGGGGAACAGACTCCACTAAATAAAACATAGGAAACCATGGCTGGTTCTTCAGCAGAGGCCATGTAGAGAAAGGAATGACCTAGGAAAGTTGGCCTGGAAGTGGAGGGAAGGATGGTGTGGGAAGAGCAGGAA--------TCTCGGAGACCAGCTTAGAGGCTTGGCAGTCACCTGGGTGCAGG-ATACAAGGGCCTGAGCCAAAGTGGTGAGGGAGGGTGGAAGGAGGCAGCCCAGAGAATGACCCTCCATGCCCATGGGGAAGGCAGAGGGCTCT-GAGAGCGA--TTCCTCCCACATG-CT-GAGCACTTGTTCTCCCTCTTCCTCCTGCATAGCAGTCAGTCTCCTCCAAACAGAAGGTCACCGGTTTGGACTTCATTCCTGGGCTCCACCCTATCCTGACCTTATCCAAGATGGACCAGACACTGGCAGTCTACCAACAGATCCTCACCAGTATGCCTTCCAGAAACATGATCCAAATATCCAACGACCTGGAGAACCTCCGGGACCTTCTTCACGTGCTGGCCTTCTCTAAGAGCTGCCACTTGCCCTGGGCCAGTGGCCTGGAGACCTTGGACAGCCTGGGGGGTGTCCTGGAAGCTTCAGGCTACTCCACAGAGGTGGTGGCCCTGAGCAGGCTGCAGGGGTCTCTGCAGGACATGCTGTGGCAGCTGGACCTCAGCCCTGGGTGCTGAGGCCTTGAAGGTCACTCTTCCTGCAAGGACTACGTTAAGGGAAGGAACTCTGGCTTCCAGGTATCTCCAGGATTGAAGAGCATTGCATGGACACCCCTTATCCAGGACTCTGTCAATT--TCCCTGAC--CTCTAAGCCACTCTTCCAAAGGCATAAGACCCTAAGCCTCCTTTTGCTTGAAACCAAAGATATATACACAGGATCCTATTCTCACCAGGAAGGGGG-TCCACCC-AGCAAAGAGTGGGCTGCATCTGGGATTCCCACCAAGGTCTTCAGCCATCA---ACAAGAGTTGTCTTGTCCCCTCT-TGACCCATCT-----------------CCCCCTCACTGAATGCTTCAATGTGACCAGGGGTGATTTCAGAGAGGGCAGAGGGGTAGGCAGAGCCTTTGGATGACCA--GAACAAGGTTCCCTCTGAGAATTCCAAGGAGTTCCATGAAGACCACATCCACACACG--CAGGAACTCCC--AGCAACACAAGCTGGAA---GCACATGTTTATTTATTCTGCGTTTTATTCTGGATGGATTTGAAGCAAAGCACCAGCTTCTCCAGGCTCTTTGGGGTCGGCCAGGGCCAGGGGTCTCCCTGGAGTGCAGTTTCCAATCCCATAGATGGGTC-TGGCTGAGGTGAACCCA---TTTTGAGTGACT----CGAGGGTTGGG-TTCATCTGAGCAAGAGCTGGCAAAGGTGGCTCTCCAGTTAGTTCTCTCGTAACTGGTTTCATTTCTACTGTGACTGATGTTAAATCACAGTGTTTGCAATGGTGTTGCCCTGAGTGGATCTCCAAGCACCAGGTTATTTTAAAA---AGATTTGTTTTATCAAGTGTCATATGTAGGTGTCTGCACCCAGGGGTGGG-GAATGTTTGGGCAGAAGGGAGAAGGATCTAGAATGTGTTTGCTGAATAACATTTGTGTGGTGGGTTCTTTGGAAGGAGTGAGA-TCATTTTCTTACCTTCTGCAATTGCTTAGGATGTTTTTCATGAAAA------------TAGCTCTTTCAG-GGGGGTTGTGAGGCCTGGCCAGGCACCCC-TGGAGAGAAGTTTCTGGCCCTGGCTGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAATGCAAAGGGCTGAAAGCCATTTGTTGGGGCAGTGGTAAGCTCTGGCTTTCTCCGACTGCTAGGGAGTGGTCTTTCCTATCATGGAGTGACGGTCCCACACTGGTGACTGCGATCTTCAGAGCAGGGGTCCTTGGTGT-GACCCTCTGAATGGTCCAGGGTTGATCACACTCTGGGTTTATTACATGGCAG-----TGTTCCTATTTGGGGCTTGCATGCCAAATTGTAGTTCTTGTCTGATTGGCTCACCC-AAGCAAGGCCAAAATTACCAAAAATCTGGGCGG----TTTTACTCTCAGTGGTAAAGAAAACTCCTT-AGCAGGGTGGTCCTGAGACCT-GACAAGCACTGCTAGGTGAGTGCCAGGACTCCCCAGGCCAGGCCACCAGGATGGCCCTTCCCACTGGAGGTCACATTCAGGAAGATGAAAGAGGAGGTTTGGGGTTTGCCACCATCCTGCTGCTGTGTTTTTGCTATCACACAGTGGGTGGTGGATCTGTCCAAGGAAACTTGAATCAAAGCAGTTAAC-TTTAAGACTGAGCACCTGCTTCATGCTCAGCCCTGACTGGTGCTATAGGCTGGAGAAGCTCACCCAATAAACATTAAGATT-GAGGCCTGCCCTCAGGGATCTTGCGTTCCCAGTGGTCAAACC-GCACTCACCCATGTGCCAAGGTGGGGGA-TTTACCACAGCAG--CTGAACAGCCAAATGCATGGTGCAGTTGACAGCAGGTGGGAAATGGTATGAGCTGAGGGGGGCCGTGCCCAGGGGCCCACAGG-GAACCCTGCTTGCACTTTGTAACATGTTTA-----CTTTTCAGGGCATCTTAGCTT---CTATTA-----TAGCCACATCCCTTTGa---aacaagataactgagaatttaaaaataagaa-----aata--
|
|
s mm5.chr6 28922375 2763 + 149721531 -----GTGGAGCCATCTGGAGACTACTATGTCTCCTGGCCAGTGTGCGTGTCTCACAGTGTGGCCTTGGCAGCTA-GGAGAAGTCAGATATTCAGAATCAAGGACAGCTTAATATAAGAGA--------------CTTATACGGAGAAAGTTCTC--ATCATCTTTCAAAAAGAG------------------------------TCATCAGGGCTGCACATGGAGAGGCCCAACTACCCAAATGTGGGTGG-----------AAATGAGAGGAAGCCAG-----------------------------------------------TGGGAAAAGCCCTTCCTGGTAACCAGACTC-----AGCA----------------------------GAGTGGGGGGG-------GGGGGCACGGCTTTGA-CCCTAATGAGGGAGAACCAC--AGAAGAGTATGACTAGGAGGGAGAGATCTGATAAGGGCAGGAGG------------CTAGAGAGA--------------------------------------------------------ATATAAGGAATAAAGAGCTATGGCTGGTTCTTCA-CGGATATCAT-TGGAGAAAGGAATTACTCAAGACTAAT----CAGAAGTGAAGGGTGGAGTGGCTCGGAATGAACAGAAA-------GTCCGGGAGACCAGCTCCGTGGCTC-CCAGTCAGCTGATGACAGG-AAGTAAGGGCCTGGACCAGGAAGGTGAGAA-----GGAAGGAGGTAGCCCAG---------------GTTCACAGATGTAATGAAGGGCTCTGGAGACCGATCTCCCTGCCACTTG-CTAAAGCACCTCTTGTTCTTCTTCCTCCTGCATAGCAGTCGGTATCCGCCAAGCAGAGGGTCACTGGCTTGGACTTCATTCCTGGGCTTCACCCCATTCTGAGTTTGTCCAAGATGGACCAGACTCTGGCAGTCTATCAACAGGTCCTCACCAGCCTGCCTTCCCAAAATGTGCTGCAGATAGCCAATGACCTGGAGAATCTCCGAGACCTCCTCCATCTGCTGGCCTTCTCCAAGAGCTGCTCCCTGCCTCAGACCAGTGGCCTGCAGAAGCCAGAGAGCCTGGATGGCGTCCTGGAAGCCTCACTCTACTCCACAGAGGTGGTGGCTTTGAGCAGGCTGCAGGGCTCTCTGCAGGACATTCTTCAACAGTTGGATGTTAGCCCTGAATGCTGAAGTTTCAAAGGCCACCAGGCTCCCAAGAATCATGTAGAGGGAAGAAACCTTGGCTTCCAGGGGTCTTCAGGAGAAGAGAGCCATGTGCACACATCCATCATTC------------ATT--TCTCTCCCTCCTGTAGACCACCCATCCAAAGGCATGACTCCACAA---------TGCTTG--ACTCAAGTTATCCACACA--ACTTCATGAGCACAAGGAGGGG----CCAGCC-TGCAGAG--------------GGGACTCTCACCTAGTTCTTCAGCAAGTAGAGATAAGAGCCATCCCATCCCCTCCATGTCCCACCTGCTCCGGGTACATGTTCCTCCGTGGGTACACGCTTCGCTGCGGCCCAGG--------AGAGGTGAGGTAGGGATGGGTAGAGCCTTTGGG------------------CTGTCTCAGAGTCTTTGGGAGCACCGTGAAGGCTGCATCCACACACAGCTGGAAACTCCC-AAGCAGCACACGATGGAA---GCACTTATTTATTTATTCTGCATTCTATTTTGGATGGATCTGAAGCAAGCCATCAGCTTTTTCAGGCT-TTGGGGGTCAGCCAGGATGAGGAAGGCTCCTGGGGTGCTGCTTTCAATCCTATTGATGGGTC-TGCCCAAGGCAAACCTAA-TTTTTGAGTGACTGGAAGGAAGGTTGGG-ATCTTCCAAACAAGAGTCTATGCAGGTAGCGCTCAAGCTTGACCTCTGGTGACTGGTTTTGTTTCTATTGTGACTGACTCTATGCAAACACGTTTGCAGCGGCATTGCCGGGAG--------CATAGGCTAGGTTATTATCAAAAGCAGATGAATTTTGTCAAGTGTAATATGTATCTATGTGCACCTGAGGGTAGA-GGATGTGTTAGAGGGAGGGTGAAGGATCCGGAA-GTGTTCTCTGAATTACATATGTGTGGTAGGCTTTTCTGAAAGGGTGAGG--CATTTTCTTACC-TCTGTGGCCACATAGTGTGGCTTT-GTGAAAAGGACAAAGGAGTTGACTCTTTCCG-GAACATTTGGAG--TGTACCAGGCACCCT----------------------------------------TGGAGGGGCT-------------------------------------AAAGCTACAGGCCTTTTGTTGGCATATTGCTGAGC--------------------------------------TCAGGGAGTGAGGGCCCCACATTTGAGACAGTGAGCCCCAAGAAAAGGGTCCCTGGTGTAGATCTCCAAGGTTGTCCAGGGTTGATCTCACAATGCGTTTCTTA---AGCAG-------------GTAGACGTTTGCATGCCAATATGTGGTTCTCATCTGATTGGTTCATCCAAAGTAGAACCCTGTCTCCCACCCATTCTGTGGGG-AGTTTTGTTC-CAGTGGGAATGAGAAATCACTTAGCAGA-TGGTCCTGAGCCCTGGGCCAGCACTGCTGAGGAAGTGCCAGGG--CCCCAGGCCAGGCTGCCAGAATTGCCCTTCGGGCTGGAG--------------GATGAACAAAGGGGCTTGGGTTTTTCCATCACCCCTGCACCCTA-TGTCACCATCAAAC--TGGGGGGCAGATCAGTGAGAGGACACTTGATGGAAAGCAATACAC-TTTAAGACTGAGCACA-GTTTCGTGCTCAGCTCTGTCTGGTGCTGTGAGCTAGAGAAGCTCACCAAATACATATAAAAATCAGAGG------CTCATG----------TCCCTGTGGTTAGACC-CTACTCAC-----------GGCGGTGTACTCCACCACAGCAGCCCCGCACCGCTGGAAGTACAGTGCTGTCTTCAACAGGTGTGAAAGAACCTGAGCTGAGGGTGACAGTGCCCAG---------GG-GAACCCTGCTTGCAGTCTATTGCATTTACATACCGCATTTCAGGGCACATTAGCATCCACTGCTA-----TGGTAGCACACTGTTGA---CACGGGATACCTGGGGTCGTAAAAATAAGAA-----AATA--
|
|
s rn3.chr4 56196112 2772 + 187371129 -----CTGGAGCCATCTGGAG----CCACA--TCCTGGCCAATGTGGATGCCTCACAGT--GGCCTTGGCAGCCCAGGAGAGGCTCCATATTCAGGATCAAGGACAACTTAAATTAAGACA-----TTTGTACGTTTTGTA-G--AGAAGTTCTC--ATCATCTTTCAAAAATAG------------------------------TCATCAGGGCTGCACATGGAGAGACCCAACTACCCAAATGTGGGTAG-----------AAATGAGAGGAAGCCAG-----------------------------------------------TGGGGAAAACCCTTCCCAT-AACCAGATTC-----AGCA----------------------------GAGTGGGGGAG---------GGGCACAACTTTGA-CCCTAATGAGGGAGAACCAC----ACAAGA-AGACTAGGAGGGAGAGATCTGATGAGGGTAGGAGG------------CTAGAGAAA--------------------------------------------------------ATATAAGGAATGGAGAGCTATG---------------GATGTCATTTGGAGAAAGGAATTGCTCCACATTAGT----CAGAAGCGAAGGGTGGAATGGTTCGGAATGAACAGAAA-------GTCTGGGAGACCAGCTCCATGGCTC-CCAGTCAGCTGACCACAGGAAAATAAGGACCTGAACCAGGAAGGTGAGAA-----GGAGAGAGGCAGCTCAG---------------GCTCACGGACATGAGGGAGGGCTCTGGAGAGCGATTTCCCTGCCATTTG-CT-GAGCACCTGTTGTTCCTCTTCCTCCTGCACAGCAGTCGGTATCCGCCAGGCAGAGGGTCACCGGTTTGGACTTCATTCCCGGGCTTCACCCCATTCTGAGTTTGTCCAAGATGGACCAGACCCTGGCAGTCTATCAACAGATCCTCACCAGCTTGCCTTCCCAAAACGTGCTGCAGATAGCTCATGACCTGGAGAACCTGCGAGACCTCCTCCATCTGCTGGCCTTCTCCAAGAGCTGCTCCCTGCCGCAGACCCGTGGCCTGCAGAAGCCAGAGAGCCTGGATGGCGTCCTGGAAGCCTCGCTCTACTCCACAGAGGTGGTGGCTCTGAGCAGGCTGCAGGGCTCTCTGCAGGACATTCTTCAACAGTTGGACCTTAGCCCTGAATGCTGAGGTTTCCAAGACCACCGGGCTCCCGAGGATCATGTTGAGGGAAGAAACCTTGGCTCCCAGGTATCCTCAGGAGAAGAGAGCCATGTGTTCACACCCGTCATCCAGGACCCTGTCCGTT--TCTCCTACTCCTCTAGACCGCCCTTCAGAAGGCATGGCTCTGCAA---------GGCTTG--ACTAAAGTTATCCGCACG--ATTCCATGAGCACTAGGAGGGGAT-TGAAGCCTTGAAGAG--------------GGGATTCTCACCTGGTTCTTCGGCAAATATAGATAAGAGCCGTCCTGTCCCCTCCGTGTTCCACCT------------------CCTCTGGGTGCGTGTTTCACTGTGGCCCAGC--------GGATGTGAGGAAGGGGTGGGTGGAGCCTCTGGA------------------CTGTCTCAGAGTCTTTGGGAGCACCATGAAGGCTACATCTGCACACAGCTGGAAACTCCCAAAGCAGCACATGCTGGAAGACGCACTTATTTATTTATTCTGCATTTTATTTTGGATGGATTTGAAGCAAAGCATCAGCTTTTTCAGGC--TTTGGGGTCAGCTGGGGCTAGGAAGGCTCCTAGGGTGCTGTTTTCAATCCTACTGATGGGTCTTGCCCGAGGCAAACCTACTTTTTTGAGTGACTGGAAGGAAGGTTGGGAATCTTCCAAACAAGAGTCTATGCAGGTAGCTCTCAAGTTTGTCCTCTGGTGGCTGGTTT-GTTTCTGTCGTGACTGACTCTATGCAAACACGTTTGCCGTGGCATTGCCTGGAG--------CGCAGGCTAGGTTATTATGAAAAGAAGATGAATTTTGTCAAGTGTAATATGCATCTATGTGCACCTGAGGGTAGG-GGATGTGTCAGAGGGAGAGAGAAGGATCCAGAA-GCATTCTCTGAATAACAGAGCTGTGGTAGACTTTTCTGAAAAGGTGAGG--CATTTTCTCACC-TCTGCAGCCACATAGTGTGGCTTT-GTGAAAAGGACAAAGGAGTTGACTCTTTTAG-GGACATTTGAAG--TATACCAGACACCCT-TAGAG--------------------------------------GGGGCT-------------------------------------AAAGTTACAGGCCTTTTGTTGGCATATTGCTGAGC--------------------------------------TCAGGGAGTGAGGGCCCCACATTGGAGACAGTGAGCCCCAAGAAAAGGGTCCCTGGTGTAGCCCTCCAAAGTTGCCCAGGGTTGATCCCACAATGCATTTCTTA---AGCAGGCAAGTATCCCTGGTAGATGTTTGCCTGTCAATATGTGGTTCTCATCTGATTGGTTCATCCAAAGTAAAACCAGGTCTCCCACCCATTCTGTGGGGCAGTTTTGTTC-CAGTGGGAATGAGAAATCACTTAGCAGA-TGGTCCTGAGCCCTGGGCCAGCACTCCTGAGGAAGTGCCAGGG--CCTCAGGCCAGGCTGCCAGAATTGCCCTTCGGGCTGGAG--------------GATGAACAAAGGGGCTTGGGTTTTTCCACCACCCCTGCACCCTTGTGTCACCATCCAGCTGTGGGTGGCAGATCAATGCAAGAAAACTTGATCGAACGCAATACACTTTTAAGACTGAGCACA-GCTCTGTGCTCAGCCCTGACTGGTGCTGTGGGCTAGAGAAGCTCACCAAATAAACATAAAAATCAGAGG------CTTTTG----------TCCCTGCGGTCAGACC-CTACTCAACAGCGTGCCAAGGCGCGTAC-TTCGCCACAGCAGCCCCACACAGTTGAAAATACAGTGCTGTCTTCAACGGAGGAGAAAGGACCGGAGCTGGGGGTGGCAGTGCCCAG---------GG-GACCCCTGCTTACAGTCTATAGCATCTCCATA---CCTTTCAGGGCACATTAGCATCCACAGCTA-----TCGTAGCACACTGTTGA---CACAGGATAACTGGGATCATAAAAATAAGAA-----AATA--
|
|
s canFam1.chr14 52878721 2930 - 63549963 ccagcacggagcAATCTAGAGATTTCCACATCTCCTGCCCATTATGGATGTCTGACAGTG-GCCTTGGGCAGCCAGGAAGAAGTTAGGTGGCCAGAAGCAGGGACAGCTCAGAACTAGATAAGAGCCTTGGGCATTTTA-A-GAGAGAAGTCTATGAGTCTCCTTGCT-------------------------------------TTCATGGGGCCACGCATGATAGGTCCAGAGTGTCCCGGCTTGGGTGG---------------TGCAGAGAGTGAG-----------------------------TGCCACAGGCAGTGGAGAAGGGGAGAAC---TCCTGGTAACCAGTGTTACTGGAGCAGAGGAGTGAGATGGGACACTCTTTGGCGGGGGAGGGGGGTGGTGGAGGAGGTCCAGCCTTGACTCCTGAGGGGGTAAGAGGCCTTGGAGAACC-TGACTGGGAGCAAGGAATCCTCTGGGGGCAAAAGAGGGTGATGATGTCTGGGGAAG-----------GGGCACTTCAGGAGGACCTCAG-TGCCTGGGGAAGAGACTTCACTAAGTAAGA-ATCAGGCCTCATGGCTGGGTCTACAGCAGAGGCCATTTCCAGGAGAGAACCACCTGCGAGGATTGGTCTGGAAGGGGAGGGCAGGGTGATTTGGGAAGAGTAGGAGTACAGAAGTCCAGGAAA-CAGCTTGGAAGCTTGGCAGCCCCTGGGGCACAAG-AAACAAGGGCCTGGGCCAGGGTGGTGAGGAAGGAGGAGAGGAGGCAAGCAAGAGAGCGGACCTCCACGCTCATGGGAGAGGCCGACACCTTG-CAGAACCG----------ACTTGTCT-GAGATCCTGCTCTCCCTTTTCCTCTGGCCCAGCAGTCTGTCTCCTCCAAACAGAGGGTCGCTGGTCTGGACTTCATTCCTGGGCTCCAACCAGTCCTGAGTTTGTCCAGGATGGACCAGACGTTGGCCATCTACCAACAGATCCTCAACAGTCTGCATTCCAGAAATGTGGTCCAAATATCTAATGACCTGGAGAACCTCCGGGACCTTCTCCACCTGCTGGCCTCCTCCAAGAGCTGCCCCTTGCCCCGGGCCAGGGGCCTGGAGACCTTTGAGAGCCTGGGCGGCGTCCTGGAAGCCTCACTCTACTCCACAGAGGTGGTGGCTCTGAGCAGACTGCAGGCGGCCCTCCAGGACATGCTTCGGCGGCTGGACCTCAGCCCTGGGTGCTGAGACCTCGAAGGCTTCTCTTCC--------CCAAGTCGAGGAGAG-AACCTGGGCTCCCAGGTGTCTCCAGGAG-AGAGACC---GTATGGGTGTCCTTTATCCTGGCCCCTAGCCGTTTCTCTCTCACACCACAGAGCCACTCTTCCAAAGGCATAAGCCTCCAC---------GGCACAAAACCAAAGATAAGAATGCAGGATTCCATGCTCACCGGGAAGGGGGACCCACCT-GGCAAACAGTGACCTGCATCTGGGGTTCTCACAAAAGGCTT-----------------------------CCTTCC-TGTGCCACCT----------------CCCCCCTCACTGCATGCTTCAGCGTGACCTGGGGTGATGTCAG--------GAGGCACCCGCTGAGCCTTTGGA---CCATCAAGCAAGGTTCTGTCTGAGAATTCT-GGGAGCACCATGAAAGCTACATCCACATAGC--TGCAAACTCCC-AAGCAACACA-------------------TTATTTATTATGCATTTTATTCTGGATGGATTTAAAGCAAAACATCAGCCTTTCCAGGCTCTTTGGGGCCAGCCAGAGCTAGGAA-----------TGCTATTTCCAATCCCATCGGTGGGCC-TGGCTGAGGCAAACCCA---TTTCTAGTGACT-----------TGAG----------------------------GGCTCTCAAGTTAGTTCTTTGGTAACTGGCTATGTTTCTACTGTGACGGATGTTAAATTACAGTGTTTGCAATGGCATTGCCCTGAGCGGATCTCCAAGGACCAGGTTATTTCAAAAAGAAGATGAATTTTGTCATGTGTGATATATAGATGTGTGTACCTGGAGGTAGGAGAACGTGTTAGCAGGAAGGGGAAGGATCCAGGATGTATTTTTTGAATTACATTTGTGCGATGGGCTCTTCGAATGGAGGGGGGTTCATGTTCTCATC-TCTGCAACCACTTAGTGTGGTTTTAATGAGAATAACAAAGGATATGACTCCTTCAGCGGGGGTTGTGGGGTTTTGCCAGCCACCCA-TGGGGGGG-----------------------------------GGCAGT-------------------------------------GGCACTGACGACTGTTTACTGGGGCAGTTGTGAGCGCTGGCCTTCTCCAATTGCTGGAGACAGGTCTTTCTTATCAGGGAATGAGGATCCCTCACTGGAGGTGGTGATCCCCAGAGCAGGGGTCCTTAGTAT-GGGCCTTGGAATGGTCTAGGGATGATCCCACACTGGATTTGTAACATGGAAG-----TACCCCTACTTGGGATTTGCATGCCAAATTGTGGTTCTCATCTGACTGGCTCACCC-AAACAAGACCATGTTTCCCTCTCATTCGGGGTAG-ATTTATACTC-CAGGGGGAAGTTCTAGGGCTTTAGCGAA-TAGTCCCAAGACCTGGACTGGCACTGGTGAGT-------------------GCCGGGCCGCCAGGAATGCCCTTCCCACCAGAGGTCACGTTTGGTGGGATGAACAAGGAGGCTTGGG-TTTTCCACCATCCTGCCACTATGATGAGGCCATCATACTCTAGGTGGTGGATCTGTTCAAGGAAATTTGAATCAAAGCTATTAAC-TTTAAGACCgagcacctactttgtgctcagtcctgattggtgctatgggctagagaagctcaccaagtaaacgttaaaatc-cagccttaccctcagggaccttgcattccagatggtaaaaatgccacacaccagcatgcaaaGGCTGGCCT-CGCACCATGGCAA--CTGAGCAGCTGAAC---CAGCGCACTCCTCAGCAGGCGGAAATG---CTGAACTGAGAGTGTCAGTGCTCAGGGGCCCACAGGCTAACCCTGCTCCCACTTCGTAGCATTTTTG-----CTTTTCAGGGCACGGCAGCAT---TTATTACTGTGTAGCCACATCCCTCTGAAGCAGCAGCATAGCTGACAATTTAAAAATaagaactaagaacata
|
|
|
|
a score=7115.000000
|
|
s hg17.chr7 127489805 61 + 158628139 TGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCA
|
|
s panTro1.chr6 129904034 61 + 161576975 TGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAATGCA
|
|
s mm5.chr6 28924347 10 + 149721531 ---------------TGGAGGGGCT------------------------------------
|
|
s rn3.chr4 56198072 6 + 187371129 -------------------GGGGCT------------------------------------
|
|
s canFam1.chr14 10669617 61 + 63549963 TGGCCCCAAAGAGCCTGGAAAGGCTGATGTTTTGCTTTAAATCCATCCAGAATAAAATGCA
|
|
|
|
a score=23704.000000
|
|
s hg17.chr7 127489806 60 + 158628139 GACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCA
|
|
s panTro1.chr6 129904035 60 + 161576975 GACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAATGCA
|
|
s mm5.chr6 28924347 10 + 149721531 --------------TGGAGGGGCT------------------------------------
|
|
s rn3.chr4 131173528 58 - 187371129 GACCCCAA--AGCCTGAAAAAGCTGATGCTTTGCTTCAAATCCATCCAAAATAAAATGCA
|
|
s canFam1.chr14 10669618 60 + 63549963 GGCCCCAAAGAGCCTGGAAAGGCTGATGTTTTGCTTTAAATCCATCCAGAATAAAATGCA
|
|
|
|
a score=29377.000000
|
|
s hg17.chr7 127489830 36 + 158628139 GATGCTTTGCTTCAAATCCATCCAGAATAAAACGCA
|
|
s panTro1.chr6 129904059 36 + 161576975 GATGCTTTGCTTCAAATCCATCCAGAATAAAATGCA
|
|
s mm5.chr6 120797671 36 - 149721531 GATGGCTTGCTTCAGATCCATCCAAAATAGAATGCA
|
|
s rn3.chr4 131173550 36 - 187371129 GATGCTTTGCTTCAAATCCATCCAAAATAAAATGCA
|
|
s canFam1.chr14 10669642 36 + 63549963 GATGTTTTGCTTTAAATCCATCCAGAATAAAATGCA
|
|
|
|
a score=67.000000
|
|
s hg17.chr7 127489866 1 + 158628139 A
|
|
s panTro1.chr6 129904095 1 + 161576975 A
|
|
s mm5.chr6 120797707 1 - 149721531 G
|
|
s rn3.chr4 131173586 1 - 187371129 G
|
|
|
|
a score=29.000000
|
|
s hg17.chr7 127489866 1 + 158628139 A
|
|
s panTro1.chr6 129904095 1 + 161576975 A
|
|
s rn3.chr4 131173586 1 - 187371129 G
|
|
|
|
a score=-4957.000000
|
|
s hg17.chr7 127489805 61 + 158628139 TGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCA
|
|
s panTro1.chr6 129904034 61 + 161576975 TGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAATGCA
|
|
s mm5.chr6 28924347 10 + 149721531 ---------------TGGAGGGGCT------------------------------------
|
|
s rn3.chr4 56198072 6 + 187371129 -------------------GGGGCT------------------------------------
|
|
s canFam1.chr14 52880782 6 - 63549963 -------------------GGCAGT------------------------------------
|
|
|
|
a score=7115.000000
|
|
s hg17.chr7 127489805 61 + 158628139 TGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCA
|
|
s panTro1.chr6 129904034 61 + 161576975 TGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAATGCA
|
|
s mm5.chr6 28924347 10 + 149721531 ---------------TGGAGGGGCT------------------------------------
|
|
s rn3.chr4 56198072 6 + 187371129 -------------------GGGGCT------------------------------------
|
|
s canFam1.chr14 10669617 61 + 63549963 TGGCCCCAAAGAGCCTGGAAAGGCTGATGTTTTGCTTTAAATCCATCCAGAATAAAATGCA
|
|
|
|
a score=23704.000000
|
|
s hg17.chr7 127489806 60 + 158628139 GACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCA
|
|
s panTro1.chr6 129904035 60 + 161576975 GACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAATGCA
|
|
s mm5.chr6 28924347 10 + 149721531 --------------TGGAGGGGCT------------------------------------
|
|
s rn3.chr4 131173528 58 - 187371129 GACCCCAA--AGCCTGAAAAAGCTGATGCTTTGCTTCAAATCCATCCAAAATAAAATGCA
|
|
s canFam1.chr14 10669618 60 + 63549963 GGCCCCAAAGAGCCTGGAAAGGCTGATGTTTTGCTTTAAATCCATCCAGAATAAAATGCA
|
|
|
|
a score=29377.000000
|
|
s hg17.chr7 127489830 36 + 158628139 GATGCTTTGCTTCAAATCCATCCAGAATAAAACGCA
|
|
s panTro1.chr6 129904059 36 + 161576975 GATGCTTTGCTTCAAATCCATCCAGAATAAAATGCA
|
|
s mm5.chr6 120797671 36 - 149721531 GATGGCTTGCTTCAGATCCATCCAAAATAGAATGCA
|
|
s rn3.chr4 131173550 36 - 187371129 GATGCTTTGCTTCAAATCCATCCAAAATAAAATGCA
|
|
s canFam1.chr14 10669642 36 + 63549963 GATGTTTTGCTTTAAATCCATCCAGAATAAAATGCA
|
|
|
|
a score=-4868.000000
|
|
s hg17.chr7 127489806 60 + 158628139 GACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCA
|
|
s panTro1.chr6 129904035 60 + 161576975 GACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAATGCA
|
|
s mm5.chr6 28924347 10 + 149721531 --------------TGGAGGGGCT------------------------------------
|
|
s rn3.chr4 56198072 6 + 187371129 ------------------GGGGCT------------------------------------
|
|
s canFam1.chr14 52880782 6 - 63549963 ------------------GGCAGT------------------------------------
|
|
|
|
a score=7022.000000
|
|
s hg17.chr7 127489806 60 + 158628139 GACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCA
|
|
s panTro1.chr6 129904035 60 + 161576975 GACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAATGCA
|
|
s mm5.chr6 28924347 10 + 149721531 --------------TGGAGGGGCT------------------------------------
|
|
s rn3.chr4 56198072 6 + 187371129 ------------------GGGGCT------------------------------------
|
|
s canFam1.chr14 10669618 60 + 63549963 GGCCCCAAAGAGCCTGGAAAGGCTGATGTTTTGCTTTAAATCCATCCAGAATAAAATGCA
|
|
|
|
a score=23704.000000
|
|
s hg17.chr7 127489806 60 + 158628139 GACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCA
|
|
s panTro1.chr6 129904035 60 + 161576975 GACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAATGCA
|
|
s mm5.chr6 28924347 10 + 149721531 --------------TGGAGGGGCT------------------------------------
|
|
s rn3.chr4 131173528 58 - 187371129 GACCCCAA--AGCCTGAAAAAGCTGATGCTTTGCTTCAAATCCATCCAAAATAAAATGCA
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s canFam1.chr14 10669618 60 + 63549963 GGCCCCAAAGAGCCTGGAAAGGCTGATGTTTTGCTTTAAATCCATCCAGAATAAAATGCA
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a score=29377.000000
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s hg17.chr7 127489830 36 + 158628139 GATGCTTTGCTTCAAATCCATCCAGAATAAAACGCA
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s panTro1.chr6 129904059 36 + 161576975 GATGCTTTGCTTCAAATCCATCCAGAATAAAATGCA
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s mm5.chr6 120797671 36 - 149721531 GATGGCTTGCTTCAGATCCATCCAAAATAGAATGCA
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s rn3.chr4 131173550 36 - 187371129 GATGCTTTGCTTCAAATCCATCCAAAATAAAATGCA
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s canFam1.chr14 10669642 36 + 63549963 GATGTTTTGCTTTAAATCCATCCAGAATAAAATGCA
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