Daniel Blankenberg c546f50963 Properly set permissions on tools that create new datasets in their post job hooks (this is deprecated).

2008-08-06 15:41:38 -04:00

..

annotation_profiler

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

data_source

Properly set permissions on tools that create new datasets in their post job hooks (this is deprecated).

2008-08-06 15:41:38 -04:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

extract

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

fasta_tools

Bug fix for Concatenate FASTA alignment by species tool.

2008-07-29 11:24:28 -04:00

filters

Corrected some text in the compare tool config.

2008-07-23 09:35:34 -04:00

hyphy

Revert 2715.

2008-06-04 13:02:15 +00:00

maf

Properly set permissions on tools that create new datasets in their post job hooks (this is deprecated).

2008-08-06 15:41:38 -04:00

metag_tools

Cleanup for fastqsolexa data type converters. We are currently supporting only the Solexa variant and will add support for other variants when the formats stabilize.

2008-06-09 20:15:04 +00:00

new_operations

Fix for gops metadata param parser when strand column not included in input dataset, added new test for gops intersect. Fix for datatype converters - now use new approach to metadata params.

2008-08-01 14:34:16 -04:00

plotting

Revert 2715.

2008-06-04 13:02:15 +00:00

regVariation

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

stats

Fixes for column_maker and filtering tool to use new approach for handling metadata in the tool params - functional tests should now pass.

2008-07-23 17:12:01 -04:00

taxonomy

typo

2008-07-07 15:17:32 +00:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

All datasets are now properly wrapped by DatasetFilenameWrapper. Certain cases had some datasets wrapped by InputValueWrapper.

2008-06-05 18:52:26 +00:00