mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-11-02 03:33:04 +08:00
Nate Coraor
7560751dc8
Whether running locally or via PBS, $PATH should now be handled in your user's environment. This also fixes problems like PYTHONPATH on the new blast nodes being wrong (because they are x86_64 and the frontends are i686). Note that you can actually start Galaxy without having an eggs dir now.
125 lines
4.9 KiB
Python
125 lines
4.9 KiB
Python
import os, sys, subprocess, tarfile, shutil
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def unpack_prebuilt_mysql():
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if not os.access( MYSQL_BINARY_ARCHIVE, os.F_OK ):
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print "unpack_prebuilt_mysql(): No binary archive of MySQL available for this platform - will build it now"
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build_mysql()
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else:
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print "unpack_prebuilt_mysql(): Found a previously built MySQL binary archive for this platform."
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print "unpack_prebuilt_mysql(): To force MySQL to be rebuilt, remove the archive:"
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print " ", MYSQL_BINARY_ARCHIVE
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t = tarfile.open( MYSQL_BINARY_ARCHIVE, "r" )
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for fn in t.getnames():
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t.extract( fn )
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t.close()
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def build_mysql():
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# untar
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print "build_mysql(): Unpacking mysql source archive from:"
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print " ", MYSQL_ARCHIVE
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t = tarfile.open( MYSQL_ARCHIVE, "r" )
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for fn in t.getnames():
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t.extract( fn )
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t.close()
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# configure
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print "build_mysql(): Running mysql configure script"
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p = subprocess.Popen( args = CONFIGURE, shell = True, cwd = os.path.join( os.getcwd(), "mysql-%s" %MYSQL_VERSION) )
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r = p.wait()
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if r != 0:
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print "build_mysql(): mysql configure script failed"
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sys.exit( 1 )
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# compile
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print "build_mysql(): Building mysql (make)"
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p = subprocess.Popen( args = "make", shell = True, cwd = os.path.join( os.getcwd(), "mysql-%s" %MYSQL_VERSION) )
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r = p.wait()
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if r != 0:
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print "build_mysql(): Building mysql (make) failed"
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sys.exit( 1 )
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# install
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print "build_mysql(): Installing mysql (make install)"
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p = subprocess.Popen( args = "make install", shell = True, cwd = os.path.join( os.getcwd(), "mysql-%s" %MYSQL_VERSION) )
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r = p.wait()
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if r != 0:
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print "build_mysql(): Installing mysql (make install) failed"
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sys.exit( 1 )
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# pack
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print "build_mysql(): Creating binary mysql archive for future builds of psycopg2"
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t = tarfile.open( MYSQL_BINARY_ARCHIVE, "w:bz2" )
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t.add( "mysql/bin/mysql_config" )
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t.add( "mysql/include" )
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t.add( "mysql/lib" )
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t.close()
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# change back to the build dir
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if os.path.dirname( sys.argv[0] ) != "":
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os.chdir( os.path.dirname( sys.argv[0] ) )
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# find setuptools
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scramble_lib = os.path.join( "..", "..", "..", "lib" )
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sys.path.append( scramble_lib )
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try:
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from setuptools import *
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import pkg_resources
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except:
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from ez_setup import use_setuptools
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use_setuptools( download_delay=8, to_dir=scramble_lib )
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from setuptools import *
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import pkg_resources
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# get the tag
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if os.access( ".galaxy_tag", os.F_OK ):
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tagfile = open( ".galaxy_tag", "r" )
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tag = tagfile.readline().strip()
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else:
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tag = None
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# globals
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MYSQL_VERSION = ( tag.split( "_" ) )[1]
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MYSQL_ARCHIVE = os.path.abspath( os.path.join( "..", "..", "..", "archives", "mysql-%s.tar.gz" %MYSQL_VERSION ) )
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MYSQL_BINARY_ARCHIVE = os.path.abspath( os.path.join( "..", "..", "..", "archives", "mysql-%s-%s.tar.bz2" %( MYSQL_VERSION, pkg_resources.get_platform() ) ) )
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# there's no need to have a completely separate build script for this
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if pkg_resources.get_platform() == "macosx-10.3-fat":
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CONFIGURE = "CFLAGS='-O -g -isysroot /Developer/SDKs/MacOSX10.4u.sdk -arch i386 -arch ppc' "
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CONFIGURE += "CXXFLAGS='-O -g -isysroot /Developer/SDKs/MacOSX10.4u.sdk -arch i386 -arch ppc' "
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CONFIGURE += "LDFLAGS='-arch i386 -arch ppc' "
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CONFIGURE += "LD='gcc -mmacosx-version-min=10.4 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -nostartfiles -arch i386 -arch ppc' "
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CONFIGURE += "./configure --prefix=%s/mysql --disable-dependency-tracking --without-server --without-uca --without-libwrap " %os.getcwd()
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CONFIGURE += "--without-extra-tools --without-openssl --without-yassl --without-docs --without-man --without-bench --enable-thread-safe-client"
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else:
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CONFIGURE = "CFLAGS='-fPIC' ./configure --prefix=%s/mysql --disable-shared --without-server --without-uca --without-libwrap " %os.getcwd()
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CONFIGURE += "--without-extra-tools --without-openssl --without-yassl --without-docs --without-man --without-bench --enable-thread-safe-client"
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# clean, in case you're running this by hand from a dirty module source dir
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for dir in [ "build", "dist", "mysql-%s" %MYSQL_VERSION ]:
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if os.access( dir, os.F_OK ):
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print "scramble_it.py: removing dir:", dir
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shutil.rmtree( dir )
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# build/unpack MySQL
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unpack_prebuilt_mysql()
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# patch
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file = "site.cfg"
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print "scramble_it(): Patching", file
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if not os.access( "%s.orig" %file, os.F_OK ):
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shutil.copyfile( file, "%s.orig" %file )
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i = open( "%s.orig" %file, "r" )
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o = open( file, "w" )
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for line in i.readlines():
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if line == "#mysql_config = /usr/local/bin/mysql_config\n":
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line = "mysql_config = mysql/bin/mysql_config\n"
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print >>o, line,
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i.close()
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o.close()
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# tag
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me = sys.argv[0]
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sys.argv = [ me ]
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if tag is not None:
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sys.argv.append( "egg_info" )
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sys.argv.append( "--tag-build=%s" %tag )
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sys.argv.append( "bdist_egg" )
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# go
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execfile( "setup.py", globals(), locals() )
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