mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-01 15:37:32 +08:00
Nate Coraor
37 lines
1.0 KiB
Bash
37 lines
1.0 KiB
Bash
#!/bin/sh
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## Set MACHTYPE to something,
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MACHTYPE=`uname -m`
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[ "$MACHTYPE" = "Power Macintosh" ] && MACHTYPE="powerpc"
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LC_ALL=POSIX
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export MACHTYPE LC_ALL
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KERNEL=`uname -s | tr "A-Z" "a-z"`
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ARCH="$KERNEL-$MACHTYPE"
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echo "Architecture appears to be $ARCH"
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UNIVERSE_HOME=`pwd`
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PYTHONPATH=$UNIVERSE_HOME/lib:$UNIVERSE_HOME/eggs
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export UNIVERSE_HOME PYTHONPATH
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## For PBS - if you need to force node paths (i.e. the arch the frontend
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## runs on is not the same arch as the compute nodes or Galaxy is
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## installed in a different path on the node).
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#NODEMACH="i686"
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#NODEARCH="linux-i686"
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#NODEPATH=$PATH
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## Certain tools (EMBOSS, PAML...) are not distributed with Galaxy.
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## If you have them installed, add their bin directories to the PATH.
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PATH=$PATH:/depot/apps/$MACHTYPE/bin:/home/universe/$ARCH/EMBOSS/bin:/home/universe/$ARCH/ImageMagick/bin:/home/universe/$ARCH/PAML/paml3.15/bin
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## NODEPATH defaults to $PATH
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: ${NODEPATH:=$PATH}
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export PATH NODEPATH
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echo "python path: $PYTHONPATH"
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python2.4 ./scripts/paster.py serve universe_wsgi.ini $@
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