mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
John Chilton
c3e99bc384
Added flag (--sync-config) to run_reports.sh script that will cause it to synchronize the database connection and file path properties in reports_wsgi.ini with those in universe_wsgi.ini prior to starting paster app. Allow specification of reports configuration directory mirroring similar extensions previously accepted for universe config and run.sh Added usage documentation to run_reports.sh. Added extension points to tweak pid and log location for reports application via environment variables.
59 lines
2.2 KiB
Python
59 lines
2.2 KiB
Python
from ConfigParser import ConfigParser
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from sys import argv
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REPLACE_PROPERTIES = ["file_path", "database_connection", "new_file_path"]
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MAIN_SECTION = "app:main"
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def sync():
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# Add or replace the relevant properites from universe_wsgi.ini
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# into reports_wsgi.ini
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reports_config_file = "reports_wsgi.ini"
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if len(argv) > 1:
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reports_config_file = argv[1]
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universe_config_file = "universe_wsgi.ini"
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if len(argv) > 2:
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universe_config_file = argv[2]
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parser = ConfigParser()
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parser.read(universe_config_file)
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with open(reports_config_file, "r") as f:
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reports_config_lines = f.readlines()
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replaced_properties = set([])
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with open(reports_config_file, "w") as f:
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# Write all properties from reports config replacing as
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# needed.
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for reports_config_line in reports_config_lines:
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(line, replaced_property) = get_synced_line(reports_config_line, parser)
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if replaced_property:
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replaced_properties.add(replaced_property)
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f.write(line)
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# If any properties appear in universe config and not in
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# reports write these as well.
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for replacement_property in REPLACE_PROPERTIES:
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if parser.has_option(MAIN_SECTION, replacement_property) and \
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not (replacement_property in replaced_properties):
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f.write(get_universe_line(replacement_property, parser))
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def get_synced_line(reports_line, universe_config):
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# Cycle through properties to replace and perform replacement on
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# this line if needed.
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synced_line = reports_line
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replaced_property = None
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for replacement_property in REPLACE_PROPERTIES:
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if reports_line.startswith(replacement_property) and \
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universe_config.has_option(MAIN_SECTION, replacement_property):
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synced_line = get_universe_line(replacement_property, universe_config)
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replaced_property = replacement_property
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break
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return (synced_line, replaced_property)
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def get_universe_line(property_name, universe_config):
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return "%s=%s\n" % (property_name, universe_config.get(MAIN_SECTION, property_name))
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if __name__ == '__main__':
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sync()
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