Greg Von Kuster 9102fc3472 1. Add support for manual file transfer from external services to a Galaxy data library using scp. This is currently enabled via the enable_beta_job_managers flag. This should not currently be used because it hits the db significantly to determine if dererred jobs are queued for running. The plan is to use messaging for this, but that approach is not yet implemented. Rabbit mq is still being used to enable manual file transfer to Galaxy data libraries when the enable_beta_job_managers flag is not set. ...

2.  Clean up the code that renders the jquery file browser plugin - things work much cleaner now.  One remaining item is handing the issue where rsh / ssh keys are not set.  Also clean up a lot of code related to manual file transfers in the requests_admin controller.

3.  In addition to the new ManualDataTransferPlugin, add the Pacific Biosciences SMRTPortalPlugin that automatically transfers files produced by SMRT Portal to a Galaxy data library.

4. Add the external service type config for Pac Bio SMRT Portal version 1.1.0.

2011-04-13 13:52:05 -04:00

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amqp_consumer.py

1. Add support for manual file transfer from external services to a Galaxy data library using scp. This is currently enabled via the enable_beta_job_managers flag. This should not currently be used because it hits the db significantly to determine if dererred jobs are queued for running. The plan is to use messaging for this, but that approach is not yet implemented. Rabbit mq is still being used to enable manual file transfer to Galaxy data libraries when the enable_beta_job_managers flag is not set.

2011-04-13 13:52:05 -04:00

data_transfer.py

Moving sample state and dataset transfer status update api methods to the samples api controller.

2010-12-20 16:05:08 -05:00

galaxydb_interface.py

sample_tracking:

2010-10-26 10:00:23 -04:00

setup_rabbitmq.py

- added the change data library sample operation functional test.

2010-11-17 11:33:54 -05:00

xml_helper.py

sample tracking data transfer mechanism streamlined.

2010-11-07 19:46:59 -05:00