James Taylor bb769367ed Make "loc files" more flexible by adding "tool data tables". These are ...

configured at the application level. Specific tabular data files are
specified in a application config file and bound to names, the tools
then refer to these names. Thus users can configure where location
files are located without modifying tool configs.

Also:

 - Simpler column name configuration
 - Columns can be referred to by name in addition to index in all
   dynamic option filters
 - A data table can merge multiple files
 - Design can support other types of data files

2010-07-08 14:36:59 -04:00

..

galaxy

Make "loc files" more flexible by adding "tool data tables". These are

2010-07-08 14:36:59 -04:00

galaxy_utils

Add a VCF to MAF Custom Track converter tool. This tool converts a Variant Call Format (VCF) file into a Multiple Alignment Format (MAF) custom track file suitable for display at genome browsers.

2010-06-14 15:07:46 -04:00

fpconst.py

Cleaning up modules. Still a few stragglers that can't be easily eggified.

2006-11-15 18:27:21 +00:00

log_tempfile.py

Since tempfiles seem to occasionally be left behind, allow logging of

2008-12-23 13:28:27 -05:00

mimeparse.py

Collapsed changeset: Trackster plugged into galaxy with behind-the-scenes indexing of Wiggle, coverage and interval datasets.

2009-03-11 00:29:01 +00:00

pkg_resources.py

Add numpy egg, update bx_python egg (now with 100% more numpy) and include code that allows scrambling to depend on other eggs existing and being importable.

2010-03-15 14:35:35 -04:00

psyco_full.py

Cleaning up modules. Still a few stragglers that can't be easily eggified.

2006-11-15 18:27:21 +00:00