Files
galaxy/config/dependency_resolvers_conf.xml.sample
T
John Chilton 1148081435 Implement a conda dependency resolver.
Much more information on planemo PR that I used to build a test bed for this:

https://github.com/galaxyproject/planemo/pull/392

Also syncs galaxy with planemo shared library changed.
2015-12-26 22:46:28 +00:00

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<dependency_resolvers>
<!-- the default configuration, first look for dependencies installed from the toolshed -->
<tool_shed_packages />
<!-- then look for env.sh files in directories according to the "galaxy packages" schema.
These resolvers can take a base_path attribute to specify where to look for
package definitions, but by default look in the directory specified by tool_dependency_dir
in Galaxy's config/galaxy.ini -->
<galaxy_packages />
<galaxy_packages versionless="true" />
<conda />
<conda versionless="true" />
<!-- Example configuration of modules dependency resolver, uses Environment Modules -->
<!--
<modules modulecmd="/opt/Modules/3.2.9/bin/modulecmd" />
<modules modulecmd="/opt/Modules/3.2.9/bin/modulecmd" versionless="true" default_indicator="default" />
Attributes are:
* modulecmd - path to modulecmd
* versionless - default: false - whether to resolve tools using a version number or not
* find_by - directory or avail - use the DirectoryModuleChecker or AvailModuleChecker
* prefetch - default: true - in the AvailModuleChecker prefetch module info with 'module avail'
* default_indicator - default: '(default)' - what indicate to the AvailModuleChecker that a module is the default version
-->
<!-- other resolvers
<tool_shed_tap />
<homebrew />
-->
</dependency_resolvers>