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86 lines
2.5 KiB
Python
86 lines
2.5 KiB
Python
import os
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import sys
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galaxy_root = os.path.abspath(os.path.join(os.path.dirname(__file__), os.path.pardir + "/" + os.path.pardir))
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sys.path[1:1] = [os.path.join(galaxy_root, "lib"), os.path.join(galaxy_root, "test")]
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import pytest
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from galaxy_test.driver import driver_util
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SKIPTEST = os.path.join(os.path.dirname(__file__), "known_broken_tools.txt")
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TEST_PREFIX = "TestForTool_"
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class DefaultGalaxyTestDriver(driver_util.GalaxyTestDriver):
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"""Default Galaxy-style test driver.
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Just populate non-shed tool tests and run tests. Works
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for tool tests, regular twill tests, and API testing.
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"""
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conda_auto_init = True
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conda_auto_install = True
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def build_tests(self):
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"""Build framework tool test methods."""
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return self.build_tool_tests(return_test_classes=True)
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def get_skiplist():
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with open(SKIPTEST) as skiptest:
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skiplist = [line.strip() for line in skiptest if line.strip() and not line.startswith("#")]
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return skiplist
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def galaxy_driver():
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driver = DefaultGalaxyTestDriver()
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driver.setup()
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return driver
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@pytest.fixture(scope="module")
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def driver(request):
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request.addfinalizer(DRIVER.tear_down)
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return DRIVER
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def get_cases():
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# We setup a global driver, so that the driver fixture can tear down the driver
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# Ideally `galaxy_driver` or `cases` would be fixtures and clean up after the yield,
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# but that's not compatible with the use use of pytest.mark.parametrize
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global DRIVER
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DRIVER = galaxy_driver()
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tests = DRIVER.build_tests()
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cases = []
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for test_name, test_class in tests.items():
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if test_name.startswith(TEST_PREFIX):
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test_class.runTest = lambda: None
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test_instance = test_class()
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cases.append(test_instance)
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return cases
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def cases():
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skiplist = get_skiplist()
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for test_instance in get_cases():
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for index in range(test_instance.test_count):
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test = (test_instance.tool_id + "_test_%d" % (index + 1), test_instance, index)
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marks = []
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marks.append(pytest.mark.skipif(test_instance.tool_id in skiplist, reason="tool in skiplist"))
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if "data_manager_" in test_instance.tool_id:
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marks.append(pytest.mark.data_manager(test))
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else:
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marks.append(pytest.mark.tool(test))
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yield pytest.param(test, marks=marks)
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def idfn(val):
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return val[0]
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@pytest.mark.parametrize("testcases", cases(), ids=idfn)
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def test_tool(testcases, driver):
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test = testcases[1]
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test.do_it(test_index=testcases[2])
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