Daniel Blankenberg 4eb1b0a79f Better determination in tests if a provided input is a DataToolParameter to better handle .gz and .zip uploads and allowing uploads from a sub-directory of test-data/.

2011-02-28 12:16:28 -05:00

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bwa_solid2fastq_modified.pl

Updated solid_to_fastq so that -1 qualities are converted to 1 before conversion to FASTQ.

2009-10-21 16:04:24 -04:00

fastq_conversions.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

fastq_conversions.xml

Updated BWA wrapper tool: replaced threads option to hard-coded value, changed output and test file output datatype to sam, changed test file names to standard, better cleanup of temp files, added dbkey parameter and exec_before_job method to set it. Also changed name of a FASTQ Conversions tool test file

2009-09-16 11:14:39 -04:00

fastq_gen_conv.py

Changed FASTQ Groomer's handling of Sanger data to output all lines even if only first n are validated

2009-10-12 14:04:28 -04:00

fastq_gen_conv.xml

ngs updates

2009-10-07 11:18:14 -04:00

solid2fastq.py

Small fixes to solid2fastq

2010-01-06 11:56:55 -05:00

solid2fastq.xml

Better determination in tests if a provided input is a DataToolParameter to better handle .gz and .zip uploads and allowing uploads from a sub-directory of test-data/.

2011-02-28 12:16:28 -05:00

solid_to_fastq.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

solid_to_fastq.xml

Updated solid_to_fastq so that -1 qualities are converted to 1 before conversion to FASTQ.

2009-10-21 16:04:24 -04:00