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46 lines
1.6 KiB
XML
46 lines
1.6 KiB
XML
<tool id="EMBOSS: pepcoil68" name="pepcoil" version="5.0.0">
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<description>Predicts coiled coil regions</description>
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<requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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<command>pepcoil -sequence $input1 -outfile $out_file1 -window $window -coil $coil -frame $frame -other $other -auto</command>
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<inputs>
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<param format="data" name="input1" type="data">
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<label>Sequence</label>
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</param>
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<param name="window" size="4" type="text" value="28">
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<label>Window size</label>
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</param>
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<param name="coil" type="select">
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<label>Report coiled coil regions</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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<param name="frame" type="select">
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<label>Show coil frameshifts</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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<param name="other" type="select">
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<label>Report non coiled coil regions</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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</inputs>
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<outputs>
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<data format="pepcoil" name="out_file1" />
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</outputs>
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<tests>
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<test>
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<param name="input1" value="2.fasta"/>
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<param name="window" value="28"/>
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<param name="coil" value="yes"/>
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<param name="frame" value="yes"/>
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<param name="other" value="yes"/>
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<output name="out_file1" file="emboss_pepcoil_out.pepcoil"/>
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</test>
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</tests>
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<help>
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You can view the original documentation here_.
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.. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/pepcoil.html
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</help>
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</tool> |