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38 lines
1.4 KiB
XML
38 lines
1.4 KiB
XML
<tool id="EMBOSS: iep45" name="iep" version="5.0.0">
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<description>Calculates the isoelectric point of a protein</description>
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<requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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<command>iep -sequence $input1 -outfile $out_file1 -step $step -amino $amino -graph png -termini $termini -auto</command>
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<inputs>
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<param format="data" name="input1" type="data">
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<label>Sequences</label>
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</param>
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<param name="step" size="5" type="text" value=".5">
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<label>Step value for pH</label>
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</param>
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<param name="amino" size="5" type="text" value="1">
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<label>Number of N-termini</label>
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</param>
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<param name="termini" type="select">
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<label>Include charge at N and C terminus</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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</inputs>
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<outputs>
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<data format="iep" name="out_file1" />
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</outputs>
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<tests>
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<test>
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<param name="input1" value="2.fasta"/>
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<param name="step" value="0.5"/>
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<param name="amino" value="1"/>
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<param name="termini" value="yes"/>
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<output name="out_file1" file="emboss_iep_out.iep"/>
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</test>
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</tests>
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<help>
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You can view the original documentation here_.
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.. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/iep.html
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</help>
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</tool> |