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https://github.com/galaxyproject/galaxy.git
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Nicola Soranzo
c35d8f2a06
Also: - Rename `FooBarTestCase` test classes as `TestFooBar`. These were collected by pytest only because they were `unittest.TestCase` derived, but normally pytest collects only test classes whose name starts with `Test`, see https://docs.pytest.org/en/7.1.x/reference/reference.html#confval-python_classes
56 lines
2.3 KiB
Python
56 lines
2.3 KiB
Python
"""Integration tests for workflow syncing."""
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from galaxy_test.base.populators import (
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DatasetPopulator,
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WorkflowPopulator,
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)
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from galaxy_test.base.uses_shed_api import UsesShedApi
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from galaxy_test.driver import integration_util
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class TestWorkflowInvocation(integration_util.IntegrationTestCase, UsesShedApi):
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dataset_populator: DatasetPopulator
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framework_tool_and_types = True
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require_admin_user = False
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def setUp(self):
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super().setUp()
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self.dataset_populator = DatasetPopulator(self.galaxy_interactor)
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self.workflow_populator = WorkflowPopulator(self.galaxy_interactor)
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def test_run_workflow_with_missing_tool(self):
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self.install_repository("iuc", "compose_text_param", "feb3acba1e0a") # 0.1.0
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with self.dataset_populator.test_history() as history_id:
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workflow_id = self.workflow_populator.upload_yaml_workflow(
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"""
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class: GalaxyWorkflow
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steps:
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nonexistent:
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tool_id: nonexistent_tool
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tool_version: "0.1"
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label: nonexistent
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compose_text_param:
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tool_id: compose_text_param
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tool_version: "0.0.1"
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label: compose_text_param
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"""
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)
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# should fail and return both tool ids since version 0.0.1 of compose_text_param does not exist
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invocation_response = self.workflow_populator.invoke_workflow(
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workflow_id, history_id=history_id, request={"require_exact_tool_versions": True}
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)
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self._assert_status_code_is(invocation_response, 400)
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assert (
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invocation_response.json().get("err_msg")
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== "Workflow was not invoked; the following required tools are not installed: nonexistent_tool (version 0.1), compose_text_param (version 0.0.1)"
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)
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# should fail but return only the tool_id of non_existent tool as another version of compose_text_param is installed
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invocation_response = self.workflow_populator.invoke_workflow(
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workflow_id, history_id=history_id, request={"require_exact_tool_versions": False}
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)
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self._assert_status_code_is(invocation_response, 400)
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assert (
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invocation_response.json().get("err_msg")
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== "Workflow was not invoked; the following required tools are not installed: nonexistent_tool"
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)
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